Locus 3681

Sequence ID 3L_DroMel_CAF1
Location 10,745,772 – 10,745,870
Length 98
Max. P 0.945324
window5744

overview

Window 4

Location 10,745,772 – 10,745,870
Length 98
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.18
Mean single sequence MFE -28.52
Consensus MFE -21.75
Energy contribution -21.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.76
SVM decision value 1.35
SVM RNA-class probability 0.945324
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10745772 98 - 23771897
AAACGGUCAGCACACCGAAAUGUAUCUCGGGCUUUG--CUUUUUGUAUCUC---------CGUCGACCAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCUUA
...((((......))))((((((((((((((...((--(.....)))..))---------))..........))))))))))(((((((....)))))))......... ( -25.10)
>DroSec_CAF1 79285 97 - 1
AAACGGUCAGCACACCGAAAUGUAUCUCCGGCUUUG--CUU-UUGUAUCUC---------CGGCGACCAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCUUA
...((((......))))((((((((((((((...((--(..-..)))...)---------))).........))))))))))(((((((....)))))))......... ( -28.00)
>DroSim_CAF1 81892 97 - 1
AAACGGUCAGCACACCGAAAUGUAUCUCGGGCUUUG--CUU-UUGUAUCUC---------CGGCGACCAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCUUA
...((((......))))((((((((((((((...((--(..-..)))..))---------))((......))))))))))))(((((((....)))))))......... ( -28.00)
>DroEre_CAF1 84227 97 - 1
AAACGGUCAGCACACCGAAAUGUAUCUCGAGGUACG--CUU-UUGUAUCUC---------CGGCCACUAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCAUA
...((((......))))((((((((((.((((((((--...-.))))))))---------..((......))))))))))))(((((((....)))))))......... ( -30.20)
>DroYak_CAF1 94692 108 - 1
AAACGGUCAGCACACCGAAAUGUAUCUCGAGGUACGCGCUC-UUGUAUCUCCAGCGAACCCGGCGACUAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCAUA
...((((......))))(((((((((((((((((((.....-.))))))))..((.......))......).))))))))))(((((((....)))))))......... ( -31.30)
>consensus
AAACGGUCAGCACACCGAAAUGUAUCUCGGGCUUUG__CUU_UUGUAUCUC_________CGGCGACCAUGCAGAUACAUUUUUGAAGCGCACGCUUCAGCAUUUCUUA
....(((......)))(((((((....................(((((((......................)))))))....((((((....)))))))))))))... (-21.75 = -21.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:04 2006