| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,744,235 – 10,744,343 |
| Length | 108 |
| Max. P | 0.952604 |
| Location | 10,744,235 – 10,744,343 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.04 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -14.72 |
| Energy contribution | -14.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10744235 108 - 23771897 UAAAAGCCACUCAACGGGUUUCCCUCUUCUGGCUUUUGAUAUAAAGCCGACUGCUUAAUUCCCCCCAUCCUCUGGCCAUUACCUUUCCCCCGUCCAUCGAGAAUACCC .........(((.(((((...........(((((((......)))))))...............(((.....))).............))))).....)))....... ( -17.50) >DroEre_CAF1 82781 89 - 1 UAAAAGCCACU-CAUGGGUUUCCCUCUUCUGGCUUUUGAUAUAAAGCCGACUGCUUAAUGCAC-CCAUCCUCUGGCCAGUACCUUUACCCC----------------- .....((((..-.((((((..........(((((((......)))))))...((.....))))-))))....))))...............----------------- ( -22.30) >DroYak_CAF1 93188 107 - 1 UAAAAGCCACUCCAUGGGUUUCCCUCUUCUGGUUUUUGAUAUAAAGCCGACUGCUUAAUUCUC-CCAUCCUCUGGCCAUUACCUUUCCCCCCUCACUCGAGACAACCC .....((((....(((((...........(((((((......))))))).............)-))))....))))...............(((....)))....... ( -18.25) >consensus UAAAAGCCACUCCAUGGGUUUCCCUCUUCUGGCUUUUGAUAUAAAGCCGACUGCUUAAUUCAC_CCAUCCUCUGGCCAUUACCUUUCCCCC_UC__UCGAGA__ACCC .....((((......(((...))).....(((((((......))))))).......................))))................................ (-14.72 = -14.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:03 2006