| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,064,993 – 1,065,097 |
| Length | 104 |
| Max. P | 0.768454 |
| Location | 1,064,993 – 1,065,097 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -18.72 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1064993 104 + 23771897 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACAUUUCAACUUGUCGACGAGCCGGCA-GAGCAACGAGC-----CCCGCCACCCCA (((((((......)))))))..(((((((...........)))))))((((((((((........)))))).)))).(((.-(.((.....))-----.).)))...... ( -23.80) >DroVir_CAF1 64698 103 + 1 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACGUUUCAACUUGUCGACGUGCUGGCC-AUUCCACCAGC-----CCCCCCUCCCC- (((((((......))))))).((((((((...........))))))))...((((((........))))))...(((((..-......)))))-----...........- ( -20.40) >DroGri_CAF1 51980 103 + 1 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACGUUUCAACUUGUCGACAUACAGCCC-UCUUCCCAACC-----CCUCCCGCCCC- (((((((......))))))).((((((((...........))))))))...((((((........))))))..........-...........-----...........- ( -13.20) >DroWil_CAF1 60848 97 + 1 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACGUUUCAACUUGUCGACAUUCUGACU----CCAU--UU-----CUCCUCACUU-- ((((((.((.(((((......((((((((...........))))))))...((((((........))))))...))))).)----).))--))-----))........-- ( -18.70) >DroMoj_CAF1 53436 106 + 1 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACAUUUCAACUUGUCGACGUACCGGCC-AUUGGACCCUCAAAUACCCCUCUCC--- (((((((......))))))).((((((((...........))))))))...((((((........))))))......((((-...)).)).................--- ( -15.50) >DroAna_CAF1 38553 101 + 1 AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACGUUUCAACUUGUCGACGAGCCGGCCAAAGCUGC---------UCCCCCUUUCCU (((((((......))))))).((((((((...........))))))))...((((((........)))))).((((.(((....)))))---------)).......... ( -20.70) >consensus AGAAAUCGAAUUAGAUUUUUCCGAUUGAAUUUUCUACAUUUUUAAUUGCUUUCGACGUUUCAACUUGUCGACGUGCCGGCC_AAUCCAC_AGC_____CCCCCCUCCCC_ (((((((......))))))).((((((((...........))))))))...((((((........))))))....................................... (-13.65 = -13.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:13 2006