Locus 3679

Sequence ID 3L_DroMel_CAF1
Location 10,743,474 – 10,743,579
Length 105
Max. P 0.800842
window5742

overview

Window 2

Location 10,743,474 – 10,743,579
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.27
Mean single sequence MFE -26.07
Consensus MFE -19.00
Energy contribution -19.50
Covariance contribution 0.50
Combinations/Pair 1.19
Mean z-score -2.50
Structure conservation index 0.73
SVM decision value 0.62
SVM RNA-class probability 0.800842
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10743474 105 + 23771897
CGUCACCAGUUUAA-GGAGAUCU-UGUUGUUCUGUUAUCAUCCAACCCCCGAAACAGGACACAAAAGGUCGCGCAUGCGCAUCUCC------AUCUCAUUUUCUCU-------UUAUCUC
..............-((((((((-(..(((((((((.((...........)))))))))))...))))))(((....)))...)))------..............-------....... ( -24.40)
>DroSec_CAF1 77005 111 + 1
CGUCACCAGUUUAA-GGAGAUCU-UGUUGUUCUGUUAUCAUACAACCCCUGAAACAGGACACAAAAGGUCGCGCAUGCGCAUCUCCAUCUCCAUCUCCUUUUCUCU-------UUAUCUC
.......((...((-((((((.(-(((.((((((((.(((.........))))))))))))))).((((.(((....)))))))........))))))))..))..-------....... ( -27.50)
>DroSim_CAF1 79624 111 + 1
CGUCACCAGUUUAA-GGAGAUCU-UGUUGUUCUGUUAUCAUACAACCCCUGAAACAGGACACAAAAGGUCGCGCAUGCGCAUCUCCAUCUCCAUCUCCUUUUCUCU-------UUAUCUC
.......((...((-((((((.(-(((.((((((((.(((.........))))))))))))))).((((.(((....)))))))........))))))))..))..-------....... ( -27.50)
>DroEre_CAF1 82038 104 + 1
CGUCACCAGUUUAA-GGAGAUCU-UGUUGUUCUGUUAUCAUACAACCCCUGAAACAGGACACAAAAGGUCGCGCAUGCGCAUCUCC------GUCUCCUUCUCUCU-------UUAUCU-
............((-((((((.(-(((.((((((((.(((.........))))))))))))))).((((.(((....)))))))..------))))))))......-------......- ( -27.20)
>DroYak_CAF1 92447 104 + 1
CGUCACCAGUUUAA-GGAGAUCU-UGUUGUUCUGUUAUCAUACAACCCCUGAAACAGGACACAAAAGGUCGCGCAUGCGCAUUUCU------AUCUCCCUCUCUCA-------UUACCG-
..............-((((((((-(..(((((((((.(((.........))))))))))))...))))))(((....)))......------...)))........-------......- ( -24.60)
>DroAna_CAF1 79813 107 + 1
CGUCAACAGUUCAAAGGGGAUAUAUCUCCUUCUAUUAUCAU-----CCCUGAAAAAGGACACAAAAGGUUGCGCAUGCGCGCCU---UCUCACUCUC--UCUCUCUGGGCGACUUAU---
.(((.........(((((((....)))))))..........-----(((.((.(.((((.....(((((.(((....)))))))---).....)).)--).).)).))).)))....--- ( -25.20)
>consensus
CGUCACCAGUUUAA_GGAGAUCU_UGUUGUUCUGUUAUCAUACAACCCCUGAAACAGGACACAAAAGGUCGCGCAUGCGCAUCUCC______AUCUCCUUCUCUCU_______UUAUCU_
...............((((((...(((.((((((((.(((.........))))))))))))))..((((.(((....)))))))........))))))...................... (-19.00 = -19.50 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:02 2006