Locus 3678

Sequence ID 3L_DroMel_CAF1
Location 10,740,697 – 10,740,810
Length 113
Max. P 0.931684
window5741

overview

Window 1

Location 10,740,697 – 10,740,810
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.89
Mean single sequence MFE -28.82
Consensus MFE -25.72
Energy contribution -25.72
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.89
SVM decision value 1.21
SVM RNA-class probability 0.931684
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10740697 113 - 23771897
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCU------UUUUGCCCGUGCCUUUGCUUUU-UGUUUUCC
....(((((...(((((((.........((.(((((.(((.((.((((((((((..(......)..).))))))))))).)))------....))))).)))))))))...-)))))... ( -28.60)
>DroSec_CAF1 74297 113 - 1
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCU------UUUUGCCCGUGCCUUUGCUUUU-UGUUUUCC
....(((((...(((((((.........((.(((((.(((.((.((((((((((..(......)..).))))))))))).)))------....))))).)))))))))...-)))))... ( -28.60)
>DroSim_CAF1 76883 113 - 1
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCU------UUUUGCCCGUGCCUUUGCUUUU-UGUUUUCC
....(((((...(((((((.........((.(((((.(((.((.((((((((((..(......)..).))))))))))).)))------....))))).)))))))))...-)))))... ( -28.60)
>DroYak_CAF1 89610 119 - 1
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCUUUUUCUUUUUGCCCGUGCCUUUGCUUUU-UGUUUUCC
....(((((...(((((((((((..((((...(((..(((.((.((((((((((..(......)..).))))))))))).)))..)))...)))).)))).)))))))...-)))))... ( -27.30)
>DroAna_CAF1 77567 114 - 1
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCU------UUUUGCCCGUGCCUUUGCUUUUUUGUUUGCU
...((((((...(((((((.........((.(((((.(((.((.((((((((((..(......)..).))))))))))).)))------....))))).)))))))))....)))))).. ( -31.00)
>consensus
AUACAAAUAUUUAGUAGAGUAUGAAGUAGUUCGGGUUGGGUACAUGAAAUGAGUUGACCUCGCUUGACCUCGUUUCAGUUUCU______UUUUGCCCGUGCCUUUGCUUUU_UGUUUUCC
....(((((...(((((((.........((.(((((.(((.((.((((((((((..(......)..).))))))))))).)))..........))))).)))))))))....)))))... (-25.72 = -25.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:01 2006