Locus 3677

Sequence ID 3L_DroMel_CAF1
Location 10,740,136 – 10,740,244
Length 108
Max. P 0.551752
window5740

overview

Window 0

Location 10,740,136 – 10,740,244
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.90
Mean single sequence MFE -30.25
Consensus MFE -18.58
Energy contribution -18.34
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.61
SVM decision value 0.04
SVM RNA-class probability 0.551752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10740136 108 - 23771897
GCAUAUGAAAUAUGUUCAAACAUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCUCUAU------------UCGAUCUGAACUUUGCAGUUACGAUUUGAGUGUGUAAUUUGCAC
(((.......(((((....))))).(((((((((..........)))))))))((((.(((...------------(((..(((.......)))...)))...))).))))....))).. ( -29.60)
>DroSec_CAF1 73713 120 - 1
GCAUAUGAAAUAUGUUCAAACAUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCUUUUUAGUUGGCCAACGACGAUCAGCACAUUGCAGAUACCAUUUGAGUGUGAAAUUUGCAC
(((.......(((((....))))).(((((((((..........)))))))))((((((......((((.....)))).(((.((.....)).))).......))))))......))).. ( -30.60)
>DroSim_CAF1 76286 120 - 1
GCAUAUGAAAUAUGUUCAAACAUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCUUUUUAGUUGGCCAACGUCGAUCUGCACUUUGCAGAUACCAUUUGAGUGUGUAAUUUGCAC
(((.......(((((....))))).(((((((((..........)))))))))((((((........((((....))))((((((.....)))))).......))))))......))).. ( -33.50)
>DroEre_CAF1 78770 118 - 1
GCAUAUGAAAUAUGUUUGAACGUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCU-UUCAGUUGGCUAAAGUUGAUCUACACUUUGCAGAUACCAU-ACAGCCUGUAAUUUGCAC
(((..((((((((((....))))).(((((((((..........)))))))))......)-))))...((((.......((((.(.....).)))).....-..)))).......))).. ( -28.14)
>DroYak_CAF1 89011 104 - 1
GCAUAUGAAAUAUGUUUGAACGUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCUACUCAGUUGGGUAGUGUCGAUCU---------------CUU-GCAGUCUGUAAUUUGCAC
(((.((......(((..((.......((((((((..........))))))))((((((..((((....))))))))))....)---------------)..-))).......)).))).. ( -29.42)
>consensus
GCAUAUGAAAUAUGUUCAAACAUAAUGAGGCCACUUGAACUGAUGUGGCUUCGAUACUCUUUUUAGUUGGCCAACGUCGAUCUGCACUUUGCAGAUACCAUUUGAGUGUGUAAUUUGCAC
(((.......(((((....))))).(((((((((..........)))))))))..............................................................))).. (-18.58 = -18.34 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:00 2006