Locus 3676

Sequence ID 3L_DroMel_CAF1
Location 10,739,798 – 10,739,906
Length 108
Max. P 0.967051
window5739

overview

Window 9

Location 10,739,798 – 10,739,906
Length 108
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 61.30
Mean single sequence MFE -27.53
Consensus MFE -16.30
Energy contribution -18.17
Covariance contribution 1.87
Combinations/Pair 1.24
Mean z-score -1.40
Structure conservation index 0.59
SVM decision value 1.60
SVM RNA-class probability 0.967051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10739798 108 + 23771897
CUGUUCUUGUCUGAAUGUUGUUGCAAUGUUC---GGACAAUGCCAACAGCAAUCUGCCAACAACAACAACGACAACAGGCAGCAGCAACAAUCAAAGCGCAACCAGGUGGG
.((((.(((((((..((((((((...((((.---((.((.(((.....)))...))))))))....)))))))).))))))).))))..........(((......))).. ( -27.10)
>DroEre_CAF1 78432 101 + 1
CUGUUGUUGCCUGCAUGUUGUUGCAACGUUCAACGGGCAGUGCCAGCAGCAAUCUGCCAACAU----------UUCAGGCAGCAGCCACAACCAAAUUGCAACAAGGUGGG
..(((((((((((.(((((((((.......)))).((((((((.....)))..))))))))))----------..))))))))))).....(((..(((...)))..))). ( -37.20)
>DroAna_CAF1 76661 98 + 1
CUUUUGUUGC--UCUUGUUGCAGCAACCGUC---ACACACUGCCCGCAGCAAUCAGUCCAUGC-------GUCAAU-UGCAACAUCAACAAAUGCACCUGAAACUGUUUGA
..(((((((.--...((((((((((......---......))).((((............)))-------).....-))))))).)))))))................... ( -18.30)
>consensus
CUGUUGUUGCCUGCAUGUUGUUGCAACGUUC___GGACAAUGCCAGCAGCAAUCUGCCAACAA_______G_CAACAGGCAGCAGCAACAAACAAACCGCAACCAGGUGGG
..(((((((((((..((((((((((..(((.....)))..)).))))))))....(....)..............)))))))))))......................... (-16.30 = -18.17 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:59 2006