| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,736,044 – 10,736,160 |
| Length | 116 |
| Max. P | 0.984795 |
| Location | 10,736,044 – 10,736,160 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.25 |
| Mean single sequence MFE | -21.02 |
| Consensus MFE | -18.60 |
| Energy contribution | -19.15 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.984795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10736044 116 - 23771897 ACUCACAUCGCGUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUUUCCAAGCUCACCAAUGCAAACAUC----GCACACAUGCACAU .........((((.(((((((....))))))).))...........((((.............(((((........)))))..((........)).......----))))....)).... ( -23.00) >DroSec_CAF1 69639 110 - 1 CCCCAUAUCGCGUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUUUCCAAGCUCACCAAUGCAAACAUC----GCACAC------AU ..((((.....((.(((((((....))))))).)))))).......((((.............(((((........)))))..((........)).......----))))..------.. ( -21.20) >DroSim_CAF1 72257 110 - 1 CCCCAUAUCGCGUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUUUCCAAGCUCACCAAUGCAAACAUC----GCACAC------AU ..((((.....((.(((((((....))))))).)))))).......((((.............(((((........)))))..((........)).......----))))..------.. ( -21.20) >DroEre_CAF1 74846 112 - 1 CCCCAUAUCGCGCUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUUUCCAAGCUCACCAAUGCAAACAUU----GCAUAC----ACAU .........(((..(((((((....)))))))..)...((((....)))).............(((((........)))))..))......(((((.....)----))))..----.... ( -20.80) >DroYak_CAF1 84899 116 - 1 CCCCAUAUCGCGUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUAUCCGAGCUCACCAAUGCAAACAUCACAAGCACAC----AUAU ..((((.....((.(((((((....))))))).)))))).......((((((((((.......))))))..............((........))...........))))..----.... ( -18.80) >DroAna_CAF1 72792 110 - 1 CCACGUAUUGCAUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUACAAAAGCUCACCAAUGCAAACAUC----AAAUAC------AU ....((.((((((((((((((....)))))).....((((((....))))((((((.......)))))).........)).........))))))))))...----......------.. ( -21.10) >consensus CCCCAUAUCGCGUUGACUUUGAUUGCAAAGUUUACAUGGCACCAAAGUGCAUUUUCAAUAAAAGGAAAUAUCAAACUUUCCAAGCUCACCAAUGCAAACAUC____GCACAC______AU .........((((((.......(((.(((((((.....((((....))))((((((.......))))))...))))))).)))......))))))......................... (-18.60 = -19.15 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:56 2006