| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,733,052 – 10,733,147 |
| Length | 95 |
| Max. P | 0.555450 |
| Location | 10,733,052 – 10,733,147 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -9.86 |
| Energy contribution | -11.07 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10733052 95 + 23771897 UUCCGUGAUCGAUGAAAGAUCUUCCACCGUGAAGAUCACUCUACUGUCUUUACCUGUCCAC-ACCUGUGA------------------------ACACCUGGACGAGAAAUACGUGAUCC ......((((.(((...(((((((......)))))))..(((...((((.....(((.(((-....))).------------------------)))...)))).)))....))))))). ( -22.40) >DroSec_CAF1 66696 95 + 1 UUCCGUGAUCGAUGAUAGAUCCUCUCUCGUGAAGAUCACUCUACUGUCUUUACCUGUCCAC-ACCUGUGG------------------------ACACCUGGACGAGAAAUACGUGAUCA .(((((((((.......))))...(((((((((((.((......))))))).(((((((((-....))))------------------------)))...))))))))...))).))... ( -27.60) >DroSim_CAF1 69314 95 + 1 UUCCGUGAUCGAUGAUAGAUCUUCUCUCGUGAAGAUCACUCUACUGUCUUUACCUGUCCAC-ACCUGUGG------------------------ACACCUGGACGAGAAAUACGUGAUCA .....(((((.(((...(((((((......)))))))..(((...((((.....(((((((-....))))------------------------)))...)))).)))....)))))))) ( -31.40) >DroEre_CAF1 71808 95 + 1 UUCCGUGAUCGACGGCAGCUCCUCUCUCGUGAAGAUCACUCUACUGUCUUCACCUGUCCAC-ACCUGUGG------------------------ACACCUGGAAGAGAAAUACGUGAUCA .....(((((.(((....(((.(((...(((((((.((......))))))))).(((((((-....))))------------------------)))...))).))).....)))))))) ( -32.10) >DroYak_CAF1 81756 119 + 1 UUCCGUGAUCGAUGACAGAUCCACUUUCUUGAAAAUCACUCUACUGUCUUCACCUGUCCAC-ACCUGUGGGCACCUGAACACCCGGACACCUGGACACCCGGACGAGAAAUACGUGAUCA .(((((((((.......))))...(((((((.............((((((((..(((((((-....)))))))..)))......))))).((((....)))).))))))).))).))... ( -31.60) >DroAna_CAF1 69655 88 + 1 UUGGGCUUU---UGACAGAUCCUCUUCGCGGACGAUUACGUUCCUGUCGUCGCCUCUGGAAGUUCCGUG---------------------------AUCGGGGCGAGUUAAAC--GAUCG ..(..(.((---((((...(((.....(((.(((((.........))))))))....))).((((((..---------------------------..))))))..)))))).--)..). ( -24.40) >consensus UUCCGUGAUCGAUGACAGAUCCUCUCUCGUGAAGAUCACUCUACUGUCUUCACCUGUCCAC_ACCUGUGG________________________ACACCUGGACGAGAAAUACGUGAUCA .....((((((........((.(((...((((((((.........))))))))....((((.....))))..............................))).))........)))))) ( -9.86 = -11.07 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:55 2006