| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,729,979 – 10,730,099 |
| Length | 120 |
| Max. P | 0.909793 |
| Location | 10,729,979 – 10,730,099 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.33 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -25.86 |
| Energy contribution | -25.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.909793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10729979 120 + 23771897 CAAAACCCCUGAGUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAGCACAAG .............((((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..)))))). ( -27.10) >DroSec_CAF1 63666 119 + 1 CAA-ACCCCUGGGUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACCAG ...-....(((((((((...........(((((((....))))))).((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).))))))))).)))) ( -30.80) >DroSim_CAF1 66247 119 + 1 CAA-ACCCCUGGGUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACAAG ..(-(((....))))((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..))))... ( -29.20) >DroEre_CAF1 68539 120 + 1 CAAGCCCCCUGGUUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACAAG .(((((....)))))((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..))))... ( -28.00) >DroYak_CAF1 78377 120 + 1 CAAACCCCCUGGUUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACAAG .(((((....)))))((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..))))... ( -28.00) >DroAna_CAF1 66544 120 + 1 CAAACCUCCUGGCUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCGAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACACC ....((....))..(((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..))))).. ( -25.50) >consensus CAAAACCCCUGGGUUGUGUAUAUUUUUCUUAAAAAUAAGUUUUUAAUUGCAAUCCGUCGAGCGAAAGCAGCCGCAGAUUAUUCGCCAAAUAAUUUGGCUAGCCGAGUGCAACAACACAAG .............((((((.........(((((((....)))))))(((((.((.((...((....))(((((..(((((((.....)))))))))))).)).)).)))))..)))))). (-25.86 = -25.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:54 2006