Locus 3671

Sequence ID 3L_DroMel_CAF1
Location 10,729,162 – 10,729,260
Length 98
Max. P 0.688054
window5734

overview

Window 4

Location 10,729,162 – 10,729,260
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 94.56
Mean single sequence MFE -20.50
Consensus MFE -16.40
Energy contribution -16.73
Covariance contribution 0.34
Combinations/Pair 1.08
Mean z-score -2.60
Structure conservation index 0.80
SVM decision value 0.32
SVM RNA-class probability 0.688054
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10729162 98 - 23771897
CCUUUUUCAAUUUAGUCCAUCGAAUGGACUGGCAUUUUCCCUCACCAUUUUCAAUUGUUUGCUGGCCGUACCUGCUUUCGGUCAAUUUUCAAUUGCCU
...........(((((((((...)))))))))...................((((((.....((((((..........)))))).....))))))... ( -20.60)
>DroSec_CAF1 62863 98 - 1
CCUUUUUCAAUUUGAACCAUCGAAUGGACUGGCAUUUUCCUUCCCAAUUUUCAAUUGUUUGUUGGCCGUACCUGCUUUCGGUCAAUUUUCAAUUGCCU
.........((((((....))))))(((..((......)).))).......((((((...((((((((..........))))))))...))))))... ( -20.50)
>DroSim_CAF1 65443 98 - 1
CCUUUUUCAAUUUGAACCAUUGAAUGGACUGGCAUUUUCCUUCCCAAUUUUCAAUUGUUUGUUGGCCGUACCUGCUUUCGGUCAAUUUUCAAUUGCCU
.....((((((.......))))))(((...((......))...))).....((((((...((((((((..........))))))))...))))))... ( -20.40)
>consensus
CCUUUUUCAAUUUGAACCAUCGAAUGGACUGGCAUUUUCCUUCCCAAUUUUCAAUUGUUUGUUGGCCGUACCUGCUUUCGGUCAAUUUUCAAUUGCCU
((...((((.(((((....)))))))))..))...................((((((...((((((((..........))))))))...))))))... (-16.40 = -16.73 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:53 2006