| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,728,683 – 10,728,791 |
| Length | 108 |
| Max. P | 0.561299 |
| Location | 10,728,683 – 10,728,791 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.54 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -19.02 |
| Energy contribution | -19.66 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10728683 108 - 23771897 GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCAGAUAUACGAGCAUAUAGAUGUACAAUGUACACCUAAAACAUAU------------ ....(((((....((((((....(((((.....)))))...........(((((...(((((((........).))))))...))))))))).))....)))))....------------ ( -22.80) >DroSec_CAF1 62407 108 - 1 GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCAGAUAUACGAGCAUAUAGAUGUACAUUGUACACGCAAAACAUAU------------ ....(((((..............(((((.....)))))..(.(((((..(((((...(((((((........).))))))...))))).))))))....)))))....------------ ( -25.00) >DroSim_CAF1 64994 108 - 1 GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCAGAUAUACGAGCAUAUAGAUGUACAUUGUACACCCAAAACAUAU------------ ....(((((..............(((((.....)))))..(.(((((..(((((...(((((((........).))))))...))))).))))))....)))))....------------ ( -25.00) >DroYak_CAF1 77037 120 - 1 GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCAGAUAUACGAGCAUAUAGAUGUACAUUGUACACCCAAAACAUAUCUACAUAUACCA ....(((((..............(((((.....)))))..(.(((((..(((((...(((((((........).))))))...))))).))))))....)))))................ ( -25.00) >DroAna_CAF1 64470 102 - 1 GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCCGAUAUACGAGCAUCUAUAUAUACAA------GCCACUAUAUAU------------ ((((((............((((.(((((.....)))))..)))).....(.(((......))).).....))))))....(((((((...------.....)))))))------------ ( -18.30) >consensus GUUCGUUUUUAAAGUUAUUAUUAGCCGCAAAAUGUGGCCCGAUACAAGAGUGCACAGAUAUGCCAGAUAUACGAGCAUAUAGAUGUACAUUGUACACCCAAAACAUAU____________ ....(((((.........((((.(((((.....)))))..)))).....(((((...(((((((........).))))))...)))))...........)))))................ (-19.02 = -19.66 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:52 2006