| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,061,657 – 1,061,752 |
| Length | 95 |
| Max. P | 0.772642 |
| Location | 1,061,657 – 1,061,752 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -14.68 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1061657 95 - 23771897 -AUCCUCCACUUCUGGUGUGGAUAUGGUCUGGAUAUUCAGGCAGUUGGGCCACA------U-----AUUUCUGCCACAUGUGUCCAGUUUUCUAUUUUUAU----------UCGCCU -.............((((((((.((((.((((((((...(((((.((.....))------.-----....)))))....))))))))....)))).)))).----------.)))). ( -26.20) >DroSec_CAF1 36202 104 - 1 -AUCCUCCACUUCUGGUGUGGAUAUGGUCCGGAUAUUCAGGCAGUUGGG-CACA------C-----AUUUCUGCCACAUGUGUCCAGUUUUCUAUUUUCAUUUAAUUCUUUUCGCCU -....(((((.......)))))...(((..((((((...(((((.((..-....------)-----)...)))))....))))))((....))....................))). ( -23.90) >DroSim_CAF1 37891 104 - 1 -AUCCUCCACUUCUGGCGUGGAUAUGGUCCGGAUAUUCAGGCAGUUGGG-CACA------U-----AUUUCUGCCACAUGUGUCCAGUUUUCUAUUUUCAUUUAAUUCUUUUCGCCU -.............((((.((((...))))((((((...(((((.((..-..))------.-----....)))))....))))))...........................)))). ( -24.30) >DroEre_CAF1 39230 109 - 1 -AUCCUCCACUUUUGAUG------UGGUCUGGAUAUUCAGGCAGUUGGG-CACAUCUACACAUAGUACUUCUGCCACAUGUGUCCACUCUUCUAUUUUUAUGUAAUUGUUUUUGCCU -((((.((((.......)------)))...))))....((((((.((((-(((((.......(((.....)))....)))))))))......(((......))).......)))))) ( -25.50) >DroYak_CAF1 37824 101 - 1 GAUCCUCCACUUUUGCUG------UGGUAUGGAUAUUCCGGCAGUUGGG-CACAU----AC-----AUUUCUGCCACAUGUGUCCACUCCUCUAUUUUUAUUUAAUUGUUUUUGGCU .((((.((((.......)------)))...)))).....((.(((.(((-(((((----..-----...........)))))))))))))........................... ( -24.12) >consensus _AUCCUCCACUUCUGGUGUGGAUAUGGUCUGGAUAUUCAGGCAGUUGGG_CACA______C_____AUUUCUGCCACAUGUGUCCAGUUUUCUAUUUUUAUUUAAUUCUUUUCGCCU ..............((((.....((((.((((((((...(((((..........................)))))....))))))))....)))).................)))). (-14.68 = -15.44 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:12 2006