Locus 3668

Sequence ID 3L_DroMel_CAF1
Location 10,725,996 – 10,726,103
Length 107
Max. P 0.508666
window5731

overview

Window 1

Location 10,725,996 – 10,726,103
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.80
Mean single sequence MFE -19.26
Consensus MFE -11.40
Energy contribution -12.54
Covariance contribution 1.14
Combinations/Pair 1.30
Mean z-score -1.85
Structure conservation index 0.59
SVM decision value -0.05
SVM RNA-class probability 0.508666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10725996 107 + 23771897
CAUCAUCGGCUUAUAUCACUCAACGAAAAUCUGCAUAUU-----------GUGUGCACGCCGAGCUCUCAUUAGCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUCCAC--A
.....(((((.....((.......)).....(((((...-----------..))))).)))))..(((((((((..............)))))))))....................--. ( -20.14)
>DroSec_CAF1 59835 107 + 1
CAUCAUCGGCUUAUAUCACUCAACGAAAAUCUGCAUAUU-----------GUGUGCACGUCGAGCUCUCAUUAGCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUCCAC--A
..(((((((.....(((.......((.....(((((...-----------..)))))..))(((((......))))).....)))...)))))))......................--. ( -19.00)
>DroSim_CAF1 62476 107 + 1
CAUCAUCGGCUUAUAUCACUCAACGAAAAUCUGCAUAUU-----------GUGUGCACGCCGAGCUCUCAUUAUCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUCAAC--A
.....(((((.....((.......)).....(((((...-----------..))))).)))))........((((((..((((......))))))))))..................--. ( -17.80)
>DroEre_CAF1 64580 106 + 1
CAACAUCGGCUUAUAUCACUCAGC-AAAAUCUGCAUAUU-----------GGUUGCACGCUGAACCCUCAUUAGCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUUCAC--A
...((((((.............((-(.....)))..(((-----------(((((...(((((.......)))))..))))))))...)))))).......................--. ( -18.50)
>DroYak_CAF1 74421 107 + 1
CAUCAUCGGCUUAUAUCACUCAGCGAAAAUCUGCAUAUU-----------GAGUGCACGCUGAACUCUCAUUAGCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUUCAC--A
.......((..........((((((......(((((...-----------..)))))))))))..(((((((((..............)))))))))..))................--. ( -21.44)
>DroAna_CAF1 61785 115 + 1
--UCAACAGCCCAUGUCCAUCAACAAAUAUCUGCAUAAUUCUAAGAUAUAGUACCUCUGAUGAACUCUCAUUGGAUAUAAUCGAUCACCUGAUGGGAUA---AAAAAUCUAUUCUUCUUA
--.............(((((((....((((((...........))))))......((..((((....))))..))..............)))))))...---.................. ( -18.70)
>consensus
CAUCAUCGGCUUAUAUCACUCAACGAAAAUCUGCAUAUU___________GUGUGCACGCCGAACUCUCAUUAGCUCCAAUCGAUCACCUGAUGAGAUACCUAAACAAACAUUCCAC__A
.....(((((.....((.......)).....(((((((............))))))).)))))..(((((((((..............)))))))))....................... (-11.40 = -12.54 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:50 2006