Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,725,435 – 10,725,575 |
Length | 140 |
Max. P | 0.992746 |
Location | 10,725,435 – 10,725,551 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.02 |
Mean single sequence MFE | -32.55 |
Consensus MFE | -31.68 |
Energy contribution | -31.85 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.97 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10725435 116 + 23771897 GGGGGAAGAU----AGACAGAUAAACAAAGUUGCAGUUGUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA ..........----...............(((((.((.(((((((((..((.......))..))))))))).))......((((((.(......)..)))))).......)))))..... ( -32.70) >DroSec_CAF1 59288 116 + 1 GGGGGAAGAU----AGACAGAUAAACAAAGUUGCAGUUGUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA ..........----...............(((((.((.(((((((((..((.......))..))))))))).))......((((((.(......)..)))))).......)))))..... ( -32.70) >DroSim_CAF1 61460 116 + 1 GGGGGAAGAU----AGACAGAUAAACAAAGUUGCAGUUGUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA ..........----...............(((((.((.(((((((((..((.......))..))))))))).))......((((((.(......)..)))))).......)))))..... ( -32.70) >DroEre_CAF1 64094 116 + 1 GGGGGAAGAU----AGACAGAUAAACAAAGUUGCAGUUGAGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA ..........----...............(((((.((...(((((((..((.......))..)))))))...))......((((((.(......)..)))))).......)))))..... ( -28.90) >DroYak_CAF1 73858 116 + 1 GGGGGAAGAU----AGACAGAUAAACAAAGUUGCAGUUGUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA ..........----...............(((((.((.(((((((((..((.......))..))))))))).))......((((((.(......)..)))))).......)))))..... ( -32.70) >DroAna_CAF1 61411 118 + 1 -GCAGAAGAUACUCAGAUAGAUAGACAAAGUUGCAGU-GUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACACUGCGGCACAUAGAGCGACAGAUA -............................(((((.((-(((((((((..((.......))..)))))))).)))......(((((((.........))))))).......)))))..... ( -35.60) >consensus GGGGGAAGAU____AGACAGAUAAACAAAGUUGCAGUUGUGUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUA .............................(((((.((.(((((((((..((.......))..))))))))).))......((((((...........)))))).......)))))..... (-31.68 = -31.85 + 0.17)
Location | 10,725,471 – 10,725,575 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -29.16 |
Energy contribution | -29.68 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.90 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10725471 104 + 23771897 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUACA---GAUA------------- (((((((..((.......))..))))))).....((((..((((((.(......)..)))))).(((...)))....))))((((((....))))))...---....------------- ( -32.80) >DroSec_CAF1 59324 98 + 1 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUA---------------------- (((((((..((.......))..))))))).....((((..((((((.(......)..)))))).(((...)))....))))((((((....)))))).---------------------- ( -32.80) >DroSim_CAF1 61496 104 + 1 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUACA---GAUA------------- (((((((..((.......))..))))))).....((((..((((((.(......)..)))))).(((...)))....))))((((((....))))))...---....------------- ( -32.80) >DroEre_CAF1 64130 104 + 1 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUACA---GAUA------------- (((((((..((.......))..))))))).....((((..((((((.(......)..)))))).(((...)))....))))((((((....))))))...---....------------- ( -32.80) >DroYak_CAF1 73894 120 + 1 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUACAGCAGAUACGGCAGAGACAGA (((((((..((.......))..)))))))....(((((..((((((.(......)..)))))).(((...)))........((((((....)))))).......)))))........... ( -34.60) >DroAna_CAF1 61449 104 + 1 GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACACUGCGGCACAUAGAGCGACAGAUACAGAUGCAGAUGGAGAUGAA---GAUA------------- (((((((..((.......))..)))))))....(((....(((((((.........))))))).(((...(((.(.......).)))..)))...)))..---....------------- ( -27.80) >consensus GUGACAGAAGCGAAGCGAGCAAUUGUCACAUUACGUAUACGCCGCGGGAGCAGACAGUGCGGCACGCAGAGCGACAGAUACAUCUGCACACGCAGAUACA___GAUA_____________ (((((((..((.......))..))))))).....((((..((((((...........)))))).(((...)))....))))((((((....))))))....................... (-29.16 = -29.68 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:46 2006