Locus 3663

Sequence ID 3L_DroMel_CAF1
Location 10,723,976 – 10,724,076
Length 100
Max. P 0.968042
window5715

overview

Window 5

Location 10,723,976 – 10,724,076
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 94.38
Mean single sequence MFE -22.42
Consensus MFE -21.40
Energy contribution -21.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.95
SVM decision value 1.62
SVM RNA-class probability 0.968042
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10723976 100 + 23771897
AAAGUACAGCAAAAAAAAAAAACGACAGAUAUCCGCACACAUGGAAAUCCACACACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCAGU
........((..........((((((.(((.((((......)))).)))....((((......)))))))))).....(((.....))).))........ ( -21.40)
>DroSec_CAF1 57924 100 + 1
AAAGUACAGCAAAAAAAAAAAGCGACAGAUAUCCGCACACAUGGAAAUCCACACACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCAGU
...((...((...........)).)).(((.((((......)))).)))..........(((((((..(((((((....))))))).)))))))...... ( -22.50)
>DroSim_CAF1 60080 99 + 1
AAAGUACAGCAAAAA-AAAAAGCGACAGAUAUCCGCACACAUGGAAAUCCACACACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCAGU
...((...((.....-.....)).)).(((.((((......)))).)))..........(((((((..(((((((....))))))).)))))))...... ( -22.60)
>DroEre_CAF1 62558 95 + 1
AAAGUACAGA-----AAAAAAGCGACAGAUAUCCGCACACAUGGAAAUCCACAUACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCAGU
...(((....-----......(((.........))).....(((....)))..)))...(((((((..(((((((....))))))).)))))))...... ( -22.80)
>DroYak_CAF1 72133 97 + 1
AAAGUACAGA---CGAAAAAAGCGACAGAUAUCCGCACACAUGGAAAUCCACAUACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCACU
...(((....---........(((.........))).....(((....)))..)))...(((((((..(((((((....))))))).)))))))...... ( -22.80)
>consensus
AAAGUACAGCAAAAAAAAAAAGCGACAGAUAUCCGCACACAUGGAAAUCCACACACAAGUCGCUGUGGUCGUUGAUCCGUCGAUGAGACAGCGAAUCAGU
.......................((..(((.((((......)))).)))..........(((((((..(((((((....))))))).))))))).))... (-21.40 = -21.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:35 2006