Locus 3661

Sequence ID 3L_DroMel_CAF1
Location 10,721,580 – 10,721,694
Length 114
Max. P 0.776023
window5712

overview

Window 2

Location 10,721,580 – 10,721,694
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.79
Mean single sequence MFE -30.62
Consensus MFE -27.50
Energy contribution -27.98
Covariance contribution 0.48
Combinations/Pair 1.03
Mean z-score -1.28
Structure conservation index 0.90
SVM decision value 0.54
SVM RNA-class probability 0.776023
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10721580 114 + 23771897
AGUCUAAUUCAUAAUAGAUUCAUGUGCUGGGCGCUUUUGCUUUGCUUUGCUCU-GGCCUGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((........)))))((.(((((..(((.(....((........))...-))))..))))).))((((..(((((..(((((....)))))..)))))..))))....... ( -32.00)
>DroSec_CAF1 55588 114 + 1
AGUCUAAUUCAUAAUAGAUUCAUGUGCUGGGCGCUUUUGCUUUGCUUUGCUCU-GGCCUGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((........)))))((.(((((..(((.(....((........))...-))))..))))).))((((..(((((..(((((....)))))..)))))..))))....... ( -32.00)
>DroSim_CAF1 57455 114 + 1
AGUCUAAUUCAUAAUAGAUUCAUGUGCUGGGCGCUUUUGCUUUGCUUUGCUCU-GGCCUGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((........)))))((.(((((..(((.(....((........))...-))))..))))).))((((..(((((..(((((....)))))..)))))..))))....... ( -32.00)
>DroEre_CAF1 60070 114 + 1
AGUCUAAUUCAUAAUAGAUUCAUGUGCUGGGCGCUUUUGCCUUGCUUUGCACU-GGCCUGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((........)))))((.(((((..(((((....))..(((...)))..-.)))..))))).))((((..(((((..(((((....)))))..)))))..))))....... ( -32.00)
>DroAna_CAF1 57931 104 + 1
AGUCUAAUUCAUAAUAGAUUCAUGUGCUUG---CU--------GUUGUGCUCUGGGCCAGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((...((((((((...((......))---))--------))))))...)))))..((((..((((((...(((((((.......))))))))).))))..))))....... ( -25.10)
>consensus
AGUCUAAUUCAUAAUAGAUUCAUGUGCUGGGCGCUUUUGCUUUGCUUUGCUCU_GGCCUGGCAUACGAGGCGUAUAAGUAAUAAGUUUUUAUUUGGCACUUGGCUGCCAAACGAU
.(((((........)))))((.((((((((((......((........)).....)))))))))).))((((..(((((..(((((....)))))..)))))..))))....... (-27.50 = -27.98 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:33 2006