| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,716,517 – 10,716,615 |
| Length | 98 |
| Max. P | 0.638536 |
| Location | 10,716,517 – 10,716,615 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 84.98 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10716517 98 - 23771897 --UGGGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCGAGGGAAAAAUUUCAAUUCAUCCUUGUACAGA-----------AGUCACUCCCAC----- --..((((.((((................(((((((((...........)))))))))((((..(((....)))..))))........-----------.)))).))))..----- ( -24.00) >DroSec_CAF1 50645 103 - 1 -UCGGGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCGAGGUA-AAAUUUCAAUUCAUCCUUGUACAGC-----------AGUCACUCCCCCUUUCC -..(((((.((((..............((((((((.((.......))))))))))(((((..-.(((....)))...)))))......-----------.)))).)))))...... ( -25.60) >DroSim_CAF1 52478 104 - 1 UUUGGGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCGAGGGA-AAAUUUCAAUUCAUCCUUGUACAGC-----------AGUCACUCCCCCUUUCC ...(((((.((((..............((((((((.((.......))))))))))((((((.-.(((....)))..))))))......-----------.)))).)))))...... ( -26.50) >DroEre_CAF1 55047 99 - 1 --UGCGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCCAGGGA-AAAUUUCAAUUCAUCCAUGU--------------AGAGUGACUUCCGCUACCA --.(((((((.((...(((......(.((((((((.((.......)))))))))).).(((.-.(((....)))..))).)))--------------...)).).))))))..... ( -19.50) >DroYak_CAF1 64558 113 - 1 --UGUGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCGAGGGA-AAAUUUCAAUUCAUCCAUGUACAGAGUAGUCGGCAGAGUGACUUCCGCUACCA --.(((((.(((..............(..(((((((((...........)))))))))..).-..........)))))))).....(.((((.(((.((.....)).)))))))). ( -24.11) >consensus __UGGGGAAUGACAAAACAAAAACAGCAAUCGAAUUGAUUCCAUUUCAUUCGGUUCGAGGGA_AAAUUUCAAUUCAUCCUUGUACAGA___________AGUCACUCCCCCUACCA ...((((..((((..............((((((((.((.......))))))))))(((((.................)))))..................))))...))))..... (-15.01 = -15.85 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:25 2006