Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,716,128 – 10,716,225 |
Length | 97 |
Max. P | 0.641470 |
Location | 10,716,128 – 10,716,225 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -17.20 |
Consensus MFE | -14.02 |
Energy contribution | -13.42 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.21 |
Mean z-score | -1.45 |
Structure conservation index | 0.82 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10716128 97 + 23771897 UAUUUUUUUA-CACACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGCU----CCAACCCCUUAAAUCACCUGACC ..........-..........(((((((.(((.(((..((.....))..)))...)))((......)).......----..............))))))).. ( -16.00) >DroSec_CAF1 50250 98 + 1 UAUUUUCUUA-CCCACAAAAAUCAGGUGUGGUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU---UCGAACCCCUUGAGCAACCUGACC ..........-..........(((((((..(((.(((((.....................))))).)))..)(((---.(((.....)))))).)))))).. ( -17.70) >DroSim_CAF1 52086 98 + 1 UAUUUUCUUA-CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU---UCGAACCCCUUAAGCCACCUGACC ..........-..........(((((((.(((.(((..((.....))..)))...)))(((.((........)).---)))............))))))).. ( -18.50) >DroEre_CAF1 54586 101 + 1 UAUUUUCUUA-CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUCGCAUCCGCUCGCACCCCUUAAACAACCUGACC ..........-.............(((((((.((((.((((..........(.....).(((.....))))))))))))))))))................. ( -20.40) >DroYak_CAF1 64115 101 + 1 UAUUUUCUUAACCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCCUCCCCCCCAC-CGAACCCCUUAAACAACCUGACC .....................(((((((((((.(((..((.....))..)))...))).((.......))........-............)).)))))).. ( -13.40) >consensus UAUUUUCUUA_CCCACAAAAAUCAGGUGUGAUGCGGUAUGUAAUACACCCCGAAAAUCUGAUACUCCAUUGCGUU___UCGAACCCCUUAAACAACCUGACC .....................(((((((((((.(((..((.....))..)))...))).(((.....))).....................)).)))))).. (-14.02 = -13.42 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006