| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,712,098 – 10,712,204 |
| Length | 106 |
| Max. P | 0.843758 |
| Location | 10,712,098 – 10,712,204 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -27.16 |
| Consensus MFE | -18.90 |
| Energy contribution | -18.98 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10712098 106 - 23771897 UAU--UUAAAUGCUAAUGGGACAUUU-UAGUAUUUUA----ACAAUUCUUGCGCCAAAUUGAUGGG-CCAUAAAAGUUAUAAGUAAUUCGAUUUUUAUGGUUGAUUAAUUGGCG ...--..(((((((((.........)-))))))))..----..........((((((.(((((.((-(((((((((((..((....)).))))))))))))).))))))))))) ( -30.50) >DroSim_CAF1 48036 110 - 1 UAU--UUAAAUGCUAAUGGGACAUUU-UAGUAUUUUAACAUACAAUUCUUGCGCCAAAUUGAUGGG-CCAUAAAAGUUAUAAGUAAUUCGAUUUUUAUGGUUGAUUAAUUGGCG ...--..(((((((((.........)-))))))))................((((((.(((((.((-(((((((((((..((....)).))))))))))))).))))))))))) ( -30.50) >DroEre_CAF1 50017 110 - 1 UAU--UUAAAUGCUAAUGGGACACUU-UAGUAUUUUAACAUAUAAUUCUUGUGCCAAAUUGAUGGG-UCAUAAAAGUUAUAAGUACUGCGAUUUUUAUGGUUGAUUAAUUGGCG ...--..(((((((((.((....)))-)))))))).................(((((.(((((.(.-.(((((((((..((.....))..)))))))))..).)))))))))). ( -27.10) >DroYak_CAF1 59749 110 - 1 UAU--UUAAAUGCUAAUGGGACACUU-UAGUAUUUUAACAUACAAUUCUUGCGCCAAAUUGAUGGG-UCAUAAAAGUUAUAAGUAAUUCGAUUUUUAUGGUUGAUUAAUUGGCG ...--..(((((((((.((....)))-))))))))................((((((.(((((.(.-.((((((((((..((....)).))))))))))..).))))))))))) ( -27.30) >DroAna_CAF1 47748 110 - 1 UAUCUUUUAAUGCUAAUGCGACAUUUUUGGUAUUUUAACAU--AAUUCCUG-GCCAAAUUGAUGGCCCCAUAAAAGCUAUUGG-AAUUCGAUUUUUAUGGAAGAUUAAUUGGUG (((.((..((((((((..........))))))))..)).))--)...((.(-((((......)))))((((((((...((((.-....))))))))))))..........)).. ( -20.40) >consensus UAU__UUAAAUGCUAAUGGGACAUUU_UAGUAUUUUAACAUACAAUUCUUGCGCCAAAUUGAUGGG_CCAUAAAAGUUAUAAGUAAUUCGAUUUUUAUGGUUGAUUAAUUGGCG .......((((((((..(.....)...))))))))................((((((.(((((.((.(((((((((((...........))))))))))))).))))))))))) (-18.90 = -18.98 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:18 2006