| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,711,215 – 10,711,326 |
| Length | 111 |
| Max. P | 0.709434 |
| Location | 10,711,215 – 10,711,326 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.16 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10711215 111 - 23771897 -C--------ACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA -.--------........(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... ( -14.06) >DroSec_CAF1 45373 111 - 1 -C--------ACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA -.--------........(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... ( -14.06) >DroSim_CAF1 47147 111 - 1 -C--------ACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA -.--------........(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... ( -14.06) >DroEre_CAF1 49112 112 - 1 AC--------ACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA ..--------........(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... ( -14.06) >DroYak_CAF1 58821 120 - 1 ACAAACAGUCACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA ..................(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... ( -14.06) >DroAna_CAF1 46981 107 - 1 -C--------ACAC----AUACAGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA -.--------....----.(((.((............(((((..(((((..........)))))..)))))..((....))..........................)))))........ ( -8.90) >consensus _C________ACACCAACACGCUGCCACACCAUCAUAUCUCAAAUUGUUAAACGAUGAGAACGAGAUGAGAACCUAAUAAGAAACCGAAUACAAAAGAUAAACACAAGCGUAAACAUUUA ..................(((((........(((...(((((..(((((..........)))))..)))))..((....))...............))).......)))))......... (-12.33 = -12.53 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:17 2006