| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,709,653 – 10,709,759 |
| Length | 106 |
| Max. P | 0.555653 |
| Location | 10,709,653 – 10,709,759 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.74 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10709653 106 - 23771897 AGAACCAAGAUUUUC-------------CAUUUAAAAAGGCAAAACUAAUAUUAGUUAUAACGAUUUUGUAAGCUAUAUAGUCUAACUGUAGACUUGCUGGCAUAAUCUGCCAUGGAUA .............((-------------(((.......((((.(((((....))))).....((((.(((.(((.....((((((....)))))).))).))).))))))))))))).. ( -24.71) >DroSec_CAF1 43957 96 - 1 AAAACCAAGAUUUUC-------------CAUUUAA--AGGCAAAACUAUUAUUAGUUAUAACGAUUUGGUAAGCUAUAUAGCCUAACU--------GCUUGCAUAAUCUGCAAUGGAUA .............((-------------((((...--..(((.(((((....))))).....((((..((((((..............--------))))))..))))))))))))).. ( -18.34) >DroSim_CAF1 45745 104 - 1 AAAACCAAGCUUUUC-------------CAUUUAA--AGGCAAAACUAUUAUUAGUUAUAACGAUUUGGUAAGCUAUAUAUCCUAACUGUGGACUUGCUGGCAUAAUCUGCAAUGGAUA ...(((((((((((.-------------.....))--))))..(((((....)))))........)))))........(((((....((..((..((....))...))..))..))))) ( -21.50) >DroEre_CAF1 47537 117 - 1 UAAACCAAGCCUUUCCACUCUUAAAUUCCAUUUAA--AAGCUAAACUAUUAUUAGUUAUAACGAUUUUGUAAGCUAUAUGGGCUAACUGUGGACUUGCUGGCAUAAUCUGCAAUGGAUA ....((((((...(((((..(((...(((((....--.((((.(((((....)))))...(((....))).))))..))))).)))..)))))...))).(((.....)))..)))... ( -23.80) >DroYak_CAF1 57220 117 - 1 AAAAUCCAGAUUUUCCAAUUCUGAAUUCCAUUUCC--AAGCAAAACUAUUACAGGUUACAACGAUUUUGUAAGCUAUAUGCCCAAAGUGUGGACUUGCUGGCAUAAUCUGCAAUGGAUA ......((((.........))))...((((((...--..(((..........((.((((((.....)))))).)).((((((..((((....))))...))))))...))))))))).. ( -25.40) >consensus AAAACCAAGAUUUUC_____________CAUUUAA__AGGCAAAACUAUUAUUAGUUAUAACGAUUUUGUAAGCUAUAUAGCCUAACUGUGGACUUGCUGGCAUAAUCUGCAAUGGAUA .......................................(((.(((((....))))).....((((.(((.(((..(((((.....))))).....))).))).)))))))........ (-11.90 = -12.74 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:16 2006