| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,709,021 – 10,709,120 |
| Length | 99 |
| Max. P | 0.581142 |
| Location | 10,709,021 – 10,709,120 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10709021 99 + 23771897 --------------------GAGCGUGUCCUCUCUUUCGCACCUGUUCCGUUUCUAUCCCUGC-UUUUCUAACUCGAACAGAAGUGAAAAAGCUUAUGCUUUUUGCCUUAGUUGUUCCUU --------------------(((((((....((.((((((..((((((.(((...........-......)))..))))))..)))))).))..)))))))................... ( -19.23) >DroSec_CAF1 43316 97 + 1 --------------------GAGCGUGGCCUCUCUUUCACACCUGUUCUGUUUCUAUC-CAGC-UUUUCUAACUCGAACAGAAAUGAAAAAGCUU-UGCUUUUUGCCUUAGUUGUUCCUU --------------------(((((.(((.............((((((.(((......-....-......)))..)))))).....(((((((..-.)))))))))).....)))))... ( -17.59) >DroSim_CAF1 45100 98 + 1 --------------------GAGCGUGGCCUCUCUUUCACACCUGUUCUGUUUCUAUC-CUGC-UUUUCUAACUCGAACAGAAGUGAAAAAGCUUAUGCUUUUUGCCUUAGUUGUUCCUU --------------------(((((.(((.......((((..((((((.(((......-....-......)))..))))))..))))((((((....)))))).))).....)))))... ( -22.79) >DroEre_CAF1 46902 98 + 1 --------------------C-UCUUGCCCUCUCUUUCACACCUGCUCCGUUUCUAUG-CUGCCUUUUCUAACUCGAGCAGAAGUGAAAAAGCUUAUGCUUUUUGCCUUAGUUGUUCCUU --------------------.-............((((((..((((((.(((......-...........)))..))))))..)))))).((((...((.....))...))))....... ( -18.33) >DroYak_CAF1 56562 98 + 1 --------------------G-UUGUGCCCUCUCUUUCGCACCUGCUCUGGUUCUAUC-CUGCUUUUUCUAACUCGAGCAGAAGUGAAAAAGCUUAUGCUUCUUGCCUUAGUUGUUCCUU --------------------.-............((((((..((((((.((((.....-...........)))).))))))..)))))).((((...((.....))...))))....... ( -20.09) >DroAna_CAF1 44761 116 + 1 UAGCCACCCCCCAACCCUCUU-UUGUUCUCUCUCUCUUGCACUUGAUAUGC--CCGUC-UCGCUUCUUCUAACUCGAACAGAAGUGAAAAAGCUUAUGCUUUUUGCUUUAGUUGUUCCUU ...........((((.(.(((-((((((..........((....(((....--..)))-..))............))))))))).)(((((((....)))))))......))))...... ( -18.95) >consensus ____________________G_GCGUGCCCUCUCUUUCACACCUGUUCUGUUUCUAUC_CUGC_UUUUCUAACUCGAACAGAAGUGAAAAAGCUUAUGCUUUUUGCCUUAGUUGUUCCUU ..................................((((((..((((((...........................))))))..)))))).((((...((.....))...))))....... (-12.52 = -12.33 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:15 2006