Locus 3650

Sequence ID 3L_DroMel_CAF1
Location 10,708,909 – 10,709,000
Length 91
Max. P 0.999430
window5692

overview

Window 2

Location 10,708,909 – 10,709,000
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.05
Mean single sequence MFE -35.10
Consensus MFE -28.58
Energy contribution -28.54
Covariance contribution -0.04
Combinations/Pair 1.17
Mean z-score -4.03
Structure conservation index 0.81
SVM decision value 3.60
SVM RNA-class probability 0.999430
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10708909 91 + 23771897
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUUGACUUUCCCCAUCUCC------CCAUUAUUGCGCGCUCUUUCAUUCCUAAC
.((((((...((((((.((((.((((((((.((((((...)))))).))))))))....)))------))))))).))))))............... ( -36.20)
>DroSec_CAF1 43198 97 + 1
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUUGACUUUCCCCUUCCCCCACCCACCAUUAUUGCGCGCUCUUUCAUUCCUAAC
.((((((...((((((.((((.((((((((.((((((...)))))).))))))))..))))........)))))).))))))............... ( -33.20)
>DroSim_CAF1 44983 96 + 1
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUUGACUUUCC-CUCCCCCCACCCACCAUUAUUGCGCGCUCUUUCAUUCCUAAC
.((((((...((((((.((((.((((((((.((((((...)))))).)))))))-))))).........)))))).))))))............... ( -33.50)
>DroEre_CAF1 46791 90 + 1
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUCGACUUUUCCCUUCCCCC-------AUUAUGGCGCGCUCUUUCACUCGCAAC
.((((((((((..(((.((((.((((((((.((((((...)))))).)).)))))).)))).)-------))))))))))))............... ( -40.50)
>DroYak_CAF1 56449 92 + 1
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUCGACUUUCCCCUUCCCCC-----CUAUUAUUGCGCUCUCUUUCACUCCCAAC
.(.((((...((((((.((((.((((((((.((((((...)))))).))))))))..))))..-----.)))))).)))).)............... ( -32.10)
>consensus
UGUGUGCCAUAUAAUGAGGGAUGGGAAAGUGGGGCGACACUUGUUUGACUUUCCCCUUCCCCC_____CCAUUAUUGCGCGCUCUUUCAUUCCUAAC
.((((((...((((((.((((.((((((((.((((((...)))))).)))))))).)))).........)))))).))))))............... (-28.58 = -28.54 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:14 2006