Locus 365

Sequence ID 3L_DroMel_CAF1
Location 1,058,219 – 1,058,309
Length 90
Max. P 0.732890
window538

overview

Window 8

Location 1,058,219 – 1,058,309
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 90.20
Mean single sequence MFE -26.78
Consensus MFE -21.06
Energy contribution -22.10
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.43
SVM RNA-class probability 0.732890
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1058219 90 - 23771897
AGCAAGUGCAGCAAUUUAAGAAAAUGCGCCAACUUGUAUUCAUCGCAAUCAAUGCGCUGCGUAGGCAGAAUGACUUCGCCUAUGGCUGGC
.((.((((((((.......((.((((((......))))))..))(((.....))))))))((((((.(((....))))))))).))).)) ( -26.40)
>DroSec_CAF1 32814 90 - 1
AGCAAGUGCAGCAAUUAAAGAAAAUACCCCGACCUGGAUUCAUCGGAAUCAAUGCGCUGCGUAGGCAGAAUGACUUUGCCUAUGGCUGGC
(((.((((((...(((......)))...........(((((....)))))..)))))).((((((((((.....)))))))))))))... ( -26.00)
>DroSim_CAF1 34066 90 - 1
AGAAAGUGCAGCAAUUUAAGAAAAUACCACGACUCGUAUUCAUCGGAAUCAAUGCGCUGCGUAGGCAGAAUGACUUUGCCUAUGGCUGGC
....((((((...((((.....(((((........))))).....))))...)))))).((((((((((.....))))))))))...... ( -24.30)
>DroEre_CAF1 36016 88 - 1
AGCAAGUGCAGCCAUUUAAGAAAAUGC--CGGGGUGGAUUCAUCGGAAUCAAUGCGCUGCGUAGGCAGAAUGACUUUGCCUAUGGCUGGC
.((.((((((((((((.........((--....)).(((((....))))))))).)))))(((((((((.....))))))))).))).)) ( -30.10)
>DroYak_CAF1 34461 88 - 1
AGCAAGUGCAACAAUUUAAGAAAAUGU--CGGGGUGGAUUCAUCGGAAUCAAUGCGCUGCGUGGGCAGAAUGACUUUGCCUAUGGCUGGC
(((.((((((.........((.....)--)......(((((....)))))..)))))).((((((((((.....)))))))))))))... ( -27.10)
>consensus
AGCAAGUGCAGCAAUUUAAGAAAAUGC__CGACGUGGAUUCAUCGGAAUCAAUGCGCUGCGUAGGCAGAAUGACUUUGCCUAUGGCUGGC
(((.((((((...((((....))))...........(((((....)))))..)))))).((((((((((.....)))))))))))))... (-21.06 = -22.10 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:09 2006