Locus 3649

Sequence ID 3L_DroMel_CAF1
Location 10,705,010 – 10,705,100
Length 90
Max. P 0.991311
window5690 window5691

overview

Window 0

Location 10,705,010 – 10,705,100
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 98.67
Mean single sequence MFE -23.20
Consensus MFE -22.24
Energy contribution -22.24
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.96
SVM decision value 0.82
SVM RNA-class probability 0.858044
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10705010 90 + 23771897
CUUUUCAUGGGGUUUCAUGGCUGACUUGCGUUCAGCCUCUUUACGCUU-UUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.......)))))).....))((.(-((...((((((.....))))))..))).))..)))).))... ( -23.10)
>DroSec_CAF1 39419 90 + 1
CUUUUCAUGGGGUUUCAUGGCUGACUUGCGUUCAGCCUCUUUACGCUU-UUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.......)))))).....))((.(-((...((((((.....))))))..))).))..)))).))... ( -23.10)
>DroSim_CAF1 41151 90 + 1
CUUUUCAUGGGGUUUCAUGGCUGACUUGCGUUCAGCCUCUUUACGCUU-UUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.......)))))).....))((.(-((...((((((.....))))))..))).))..)))).))... ( -23.10)
>DroEre_CAF1 42755 90 + 1
CUUUUCAUGGGGUUUCAUGGCUGACUGGCGUUCAGCCUCUUUACGCUU-UUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.......)))))).....))((.(-((...((((((.....))))))..))).))..)))).))... ( -23.10)
>DroYak_CAF1 52374 90 + 1
CUUUUCAUGGGGUUUCAUGGCUGACUUGC-UUCAGCCUCUUUACGCUUUUUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.....-.)))))).....))((.(((....((((((.....))))))..))).))..)))).))... ( -23.60)
>consensus
CUUUUCAUGGGGUUUCAUGGCUGACUUGCGUUCAGCCUCUUUACGCUU_UUCCUCGGCCAUAAGUUGGCUGUUAAAUGCUACUUACGACUG
....((.((((((.....((((((.......)))))).....))((........((((((.....))))))......))..)))).))... (-22.24 = -22.24 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 10,705,010 – 10,705,100
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -22.84
Consensus MFE -21.62
Energy contribution -21.82
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.95
SVM decision value 2.26
SVM RNA-class probability 0.991311
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10705010 90 - 23771897
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAA-AAGCGUAAAGAGGCUGAACGCAAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...((..-...(((.....((((((.(....)))))))))).....))........ ( -24.10)
>DroSec_CAF1 39419 90 - 1
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAA-AAGCGUAAAGAGGCUGAACGCAAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...((..-...(((.....((((((.(....)))))))))).....))........ ( -24.10)
>DroSim_CAF1 41151 90 - 1
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAA-AAGCGUAAAGAGGCUGAACGCAAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...((..-...(((.....((((((.(....)))))))))).....))........ ( -24.10)
>DroEre_CAF1 42755 90 - 1
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAA-AAGCGUAAAGAGGCUGAACGCCAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...((..-...(((.....((((((.(....)))))))))).....))........ ( -21.10)
>DroYak_CAF1 52374 90 - 1
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAAAAAGCGUAAAGAGGCUGAA-GCAAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...................((((((.-.....)))))).................. ( -20.80)
>consensus
CAGUCGUAAGUAGCAUUUAACAGCCAACUUAUGGCCGAGGAA_AAGCGUAAAGAGGCUGAACGCAAGUCAGCCAUGAAACCCCAUGAAAAG
..(((((((((.((........))..)))))))))...................((((((.(....))))))).................. (-21.62 = -21.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:13 2006