| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,699,197 – 10,699,317 |
| Length | 120 |
| Max. P | 0.999759 |
| Location | 10,699,197 – 10,699,317 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.06 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -27.10 |
| Energy contribution | -27.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.96 |
| SVM decision value | 4.02 |
| SVM RNA-class probability | 0.999759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10699197 120 + 23771897 UUGGUUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAAAAAAAAAAGA .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))...................................... ( -27.10) >DroSec_CAF1 33616 112 + 1 UUGGUUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAA-A-------A .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))............................-.-------. ( -27.10) >DroSim_CAF1 35236 113 + 1 UUGGUUCGUGUCAUCGCUGGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAAAA-------A .......((((((.(((((((((.((((........(....)....((....)).....))))....)))))))))))))))..............................-------. ( -33.60) >DroEre_CAF1 37155 112 + 1 UUGGUUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAA-A-------A .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))............................-.-------. ( -27.10) >DroYak_CAF1 46647 112 + 1 UUGGUUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAA-A-------A .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))............................-.-------. ( -27.10) >DroAna_CAF1 35190 112 + 1 UUGGCUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAACGAACAGAACAAAA-A-------A .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))............................-.-------. ( -27.10) >consensus UUGGUUCGUGUCAUCGCUUGGGCUUGACUGGCAAGCGGAAACAUAACCAGAAGGAUAACGUUAUAAUGCCCCAGUGUGGCACAAUAUAUACAAAAAUGAAUACAACAAAA_A_______A .......((((((.((((.((((.((((........(....)....((....)).....))))....)))).))))))))))...................................... (-27.10 = -27.10 + -0.00)
| Location | 10,699,197 – 10,699,317 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.06 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -23.49 |
| Energy contribution | -23.35 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10699197 120 - 23771897 UCUUUUUUUUUUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAACCAA .............................((.((((.(((.((.....)).))).))))))..........(((((.((((..((((((...........))))))..))))..))))). ( -24.00) >DroSec_CAF1 33616 112 - 1 U-------U-UUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAACCAA .-------.-...................((.((((.(((.((.....)).))).))))))..........(((((.((((..((((((...........))))))..))))..))))). ( -24.00) >DroSim_CAF1 35236 113 - 1 U-------UUUUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCCAGCGAUGACACGAACCAA .-------........(((((.((....)).)))))(((((.(((.(((((((..((......)).....(((((...((....))..)))))....))))))).).)).)))))..... ( -27.90) >DroEre_CAF1 37155 112 - 1 U-------U-UUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAACCAA .-------.-...................((.((((.(((.((.....)).))).))))))..........(((((.((((..((((((...........))))))..))))..))))). ( -24.00) >DroYak_CAF1 46647 112 - 1 U-------U-UUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAACCAA .-------.-...................((.((((.(((.((.....)).))).))))))..........(((((.((((..((((((...........))))))..))))..))))). ( -24.00) >DroAna_CAF1 35190 112 - 1 U-------U-UUUUGUUCUGUUCGUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAGCCAA .-------.-.........((((((....((.((((.(((.((.....)).))).))))))((((((...(((((...((....))..)))))....((....))))))))))))))... ( -28.10) >consensus U_______U_UUUUGUUGUAUUCAUUUUUGUAUAUAUUGUGCCACACUGGGGCAUUAUAACGUUAUCCUUCUGGUUAUGUUUCCGCUUGCCAGUCAAGCCCAAGCGAUGACACGAACCAA ..........................(((((.((((.(((.((.....)).))).))))..((((((...(((((...((....))..)))))....((....))))))))))))).... (-23.49 = -23.35 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:05 2006