Locus 3644

Sequence ID 3L_DroMel_CAF1
Location 10,698,491 – 10,698,597
Length 106
Max. P 0.783553
window5681

overview

Window 1

Location 10,698,491 – 10,698,597
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 98.12
Mean single sequence MFE -25.65
Consensus MFE -25.04
Energy contribution -25.24
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.98
SVM decision value 0.56
SVM RNA-class probability 0.783553
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10698491 106 + 23771897
CACCUGAA-AACUCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGCGGCAUUCUCAUCUUGUGGCGCCAC
........-.........(((.........((((((.((((((......))))))....((.((((((((...)))))))))))))))).........)))...... ( -26.27)
>DroSec_CAF1 32871 106 + 1
CACCUGAA-AACUCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGGGGCAUUCUCAUCUCGUGGCGCCAC
........-.........(((.........((((((.((((((......)))))).......((((((((...))))))))..)))))).........)))...... ( -23.17)
>DroSim_CAF1 34497 106 + 1
CACCUGAA-AACUCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGCGGCAUUCUCAUAUCGUGGCGCCAC
........-.........(((.........((((((.((((((......))))))....((.((((((((...)))))))))))))))).........)))...... ( -26.27)
>DroEre_CAF1 36417 106 + 1
CACCUGAA-AACUCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGCGGCAUUCUCAUCUCGUGGCGCCAC
........-.........(((.........((((((.((((((......))))))....((.((((((((...)))))))))))))))).........)))...... ( -26.27)
>DroYak_CAF1 45890 107 + 1
CACCUGAAAAACCCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGCGGCAUUCUCAUCUCGUGGCGCCAC
..................(((.........((((((.((((((......))))))....((.((((((((...)))))))))))))))).........)))...... ( -26.27)
>consensus
CACCUGAA_AACUCAAACCCAACUCAUCCCAAUGCCAUUUCCGUUCUCGUGGAAAAGUUGCACCACUUAGCGUUUAAGUGGGCGGCAUUCUCAUCUCGUGGCGCCAC
.................................((((((((((......)))))).(((((.((((((((...)))))))))))))............))))..... (-25.04 = -25.24 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:03 2006