Locus 3643

Sequence ID 3L_DroMel_CAF1
Location 10,696,607 – 10,696,727
Length 120
Max. P 0.737484
window5680

overview

Window 0

Location 10,696,607 – 10,696,727
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.28
Mean single sequence MFE -34.57
Consensus MFE -30.71
Energy contribution -31.83
Covariance contribution 1.11
Combinations/Pair 1.10
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.44
SVM RNA-class probability 0.737484
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10696607 120 + 23771897
UAGCUGGCUUUUGCUGGUUUGACUGUGGCUGGAUCUCCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
((((((......(((((..((((((..((.((....))))..))))))..))))).............((....)).((((((...............)))))).....))))))..... ( -37.06)
>DroSec_CAF1 31014 120 + 1
UAGCUGGCUUUUGCUGGUUUGACUGUGGCUGGGUCUCCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
((((((......(((((..((((((..((.((....))))..))))))..))))).............((....)).((((((...............)))))).....))))))..... ( -36.16)
>DroSim_CAF1 32622 120 + 1
UAGCUGGCUUUUGCUGGUUUGACUGUGGCUGGGUCUCCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
((((((......(((((..((((((..((.((....))))..))))))..))))).............((....)).((((((...............)))))).....))))))..... ( -36.16)
>DroEre_CAF1 34546 120 + 1
UAGCUGGCUUUUGCUGGUUUGACUGUGGCUGGGUCUCCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
((((((......(((((..((((((..((.((....))))..))))))..))))).............((....)).((((((...............)))))).....))))))..... ( -36.16)
>DroYak_CAF1 43975 120 + 1
UAGCUGGCUUUUGCUGGCUUGACUGUGGCUGGGACUCCGUUUCAGUUGCUCCGGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
.(((..((....))..)))....((..((((((((..(......)..).))).((((.......(((((.(((((...))))).))))).......)))).........))))..))... ( -36.24)
>DroAna_CAF1 31264 105 + 1
UAG---------------UUGACUGGGACUGGGUCCUCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACACAUACAGAUGCAGAA
...---------------..(((((..((.((....))))..)))))......(((((..........((....))(((((((...............)))))))......))))).... ( -25.66)
>consensus
UAGCUGGCUUUUGCUGGUUUGACUGUGGCUGGGUCUCCGUUUCAGUUGCUCCAGCGUUAUCAUUCAGUGCGCAAGCUGUUUGCUCAUUGUCUAUUUAUGCAAACCCAUACAGCUGCAAGU
((((((......(((((..((((((..((.((....))))..))))))..))))).............((....)).((((((...............)))))).....))))))..... (-30.71 = -31.83 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:02 2006