| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,056,872 – 1,056,967 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 1,056,872 – 1,056,967 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -18.12 |
| Energy contribution | -19.07 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1056872 95 + 23771897 CUUGGCAAUAAAAGUUUUCGUCUUUUCCCCAUGCGAGCCGAGCGCGCAAGGAAAAUGUUCUGAAAAUGCUCGGAAAAUGGAGGGACGGGCGAGAA ..............(((((((((.((((((((.....(((((((.....((((....)))).....)))))))...)))).)))).))))))))) ( -34.30) >DroSec_CAF1 31539 73 + 1 CUUGGCAAUAAAAGUUUUCGUCUUUUCCCCAUGC-----------GCAAGGAAA-----------AUGCUCGGAAAAUGCAGGGACGGGCGAGAG ...............((((((((..((((..(.(-----------....).)..-----------.(((.........))))))).)))))))). ( -17.90) >DroSim_CAF1 32788 73 + 1 CUUGGCAAUAAAAGUUUUCGUCUUUUCCCCAUGC-----------GCAAGGAAA-----------AUGCUCGGAAAAUGCAGGGACGGGCGAGAA ..............(((((((((..((((..(.(-----------....).)..-----------.(((.........))))))).))))))))) ( -18.00) >consensus CUUGGCAAUAAAAGUUUUCGUCUUUUCCCCAUGC___________GCAAGGAAA___________AUGCUCGGAAAAUGCAGGGACGGGCGAGAA ..............(((((((((.((((((.((((((.....)))))).))...............(((.........))))))).))))))))) (-18.12 = -19.07 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:08 2006