Locus 3639

Sequence ID 3L_DroMel_CAF1
Location 10,690,795 – 10,690,890
Length 95
Max. P 0.758112
window5675

overview

Window 5

Location 10,690,795 – 10,690,890
Length 95
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.14
Mean single sequence MFE -33.90
Consensus MFE -27.85
Energy contribution -27.23
Covariance contribution -0.63
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.82
SVM decision value 0.49
SVM RNA-class probability 0.758112
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10690795 95 - 23771897
GGUCAG---------------------UGGUCAGUGGUCCGCUCUGCGGUCUGAGCUCU--GAGUUCUGGCGUCCAGUUCUUGGCCGCUGACAAAACGAUCGUAAAUAAUUUUUAUUU
((((.(---------------------(.((((((((((.((((........))))...--(((..((((...))))..)))))))))))))...))))))................. ( -34.70)
>DroSec_CAF1 25045 95 - 1
--UCAG---------------------UGGUCAGUGGUUCGCUCUGCGGUCCGAGCUCUGUGAGUUCUGGCGUCCAGUUCUUGGCCGCUGACAAAACGAUCGUAAAUAAUUUUUAUUU
--...(---------------------(.((((((((((....(((..(((.((((((...)))))).)))...))).....))))))))))...))..................... ( -28.80)
>DroSim_CAF1 26495 97 - 1
GGUCAG---------------------UGGUCAGUGGUUCGCUCUGCGGUCCGAGCUCUGUGAGUUCUGGCGUCCAGUUCUUAGCCGCUGACAAAACGAUCGUAAAUAAUUUUUAUUU
((((.(---------------------(.(((((((((..((((........))))....((((..((((...))))..)))))))))))))...))))))................. ( -32.80)
>DroYak_CAF1 37426 116 - 1
GGCAAGUGGUCGAUGGUCGGUGGUCGAUGGUCAGUGGUCCGCUCUGCGGUGCGAGCUCU--GGGUUCUGCCGUCCAGUUCUUGGCCGCUGACAAAACGAUCGUAAAUAAUUUUUAUUU
.......(((((...((((((((((((.((.(....).))(((..((((((.((((...--..))))))))))..)))..))))))))))))....)))))................. ( -39.30)
>consensus
GGUCAG_____________________UGGUCAGUGGUCCGCUCUGCGGUCCGAGCUCU__GAGUUCUGGCGUCCAGUUCUUGGCCGCUGACAAAACGAUCGUAAAUAAUUUUUAUUU
.............................((((((((((.((((........)))).....(((..(((.....)))..))))))))))))).......................... (-27.85 = -27.23 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:57 2006