| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,689,849 – 10,689,943 |
| Length | 94 |
| Max. P | 0.527066 |
| Location | 10,689,849 – 10,689,943 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 89.53 |
| Mean single sequence MFE | -15.82 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.35 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10689849 94 + 23771897 AAUGCCC-CUUCCGUCCAUGGCUCCAUGUCCAUGUCCAUUUCUGAUGCCCAGUCUUCUGCGGGCAUUGACACACAACAAACAC--ACACACAUACAC (((((((-.....(..((((((.....).)))))..)....(((.....)))........)))))))................--............ ( -19.20) >DroSim_CAF1 25572 88 + 1 AAUGCCC-CUUCCGUCCAUGGCUCCAUG------UCCAUUUCUGAUGCCCAGUCUUCUGCGGCCAUUGACACACAACAAACAC--ACAUACACACAC .......-.....(((.((((((.((.(------.......(((.....)))....))).)))))).))).............--............ ( -14.20) >DroEre_CAF1 24795 96 + 1 AAUGCCC-CUUCCGUCCAUGGCUUCAUGUCCAGCUCCAUUUCUGAUGCCCAGUCUUCUGCGGCCAUUGACACACAACAAACACAUACACUCACACGC .......-.....(((.((((((.........((..((....))..)).(((....))).)))))).)))........................... ( -14.50) >DroYak_CAF1 36451 95 + 1 AAUGCCCCCCUCCGUCCAUGGCUUCAUGUCCAGGUCCAUUUCUGAUGCCAAGUCUUCUGCGGCCAUUGACACACAACAAACAC--ACACUAACACAC .............(((.((((((.......((((......))))..((..((....)))))))))).))).............--............ ( -15.40) >consensus AAUGCCC_CUUCCGUCCAUGGCUCCAUGUCCAGGUCCAUUUCUGAUGCCCAGUCUUCUGCGGCCAUUGACACACAACAAACAC__ACACACACACAC .............(((((((....))))...............(((((((((....))).)).)))))))........................... (-11.10 = -11.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:56 2006