| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,687,650 – 10,687,766 |
| Length | 116 |
| Max. P | 0.876124 |
| Location | 10,687,650 – 10,687,766 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Mean single sequence MFE | -26.01 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.876124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10687650 116 - 23771897 UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUUGGAAA--AUUAGGAUCACUUUAGGCAAAGUAGAGGCAUA--UGGUUUCUAUAAGAAAUGAGGCAGAUUAAUGCCA ......(((((((......(((((((((....).))))))))........--.....((((.(((((......((((((((...--..))))))))......)))))..))))))))))) ( -30.40) >DroSec_CAF1 21900 118 - 1 UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUAAGAAAA-AAAAGGAUUUCAUUAGUCAAAGUAAAG-CCUAAAAAAGCUGUAUAAAGAAAGAGGUCGAUUAAUGAUA ...((((((..........(((((((((....).))))))))))))))...-.........(((((((((...(((.((-(........))).)))...((......))))))))))).. ( -22.90) >DroSim_CAF1 23380 119 - 1 UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUAAGAAAAAAAAAGGAUCUCAUUAGUCAAAGUAAAG-CAUAAAAAAGCUGUAUAAAAAAAGGGGCAGAUUAAUGCCA ......(((((((......(((((((((....).))))))))...............((((((..........(((.((-(........))).)))..........).)))))))))))) ( -24.15) >DroEre_CAF1 22638 93 - 1 UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUUAGAAAA-AA-----------------------AG---UGAAACAGCUUUCUAAAGAAAGUGGCAGAUUAAUGUCA ......(((((((......(((((((.(((..(((((.(((((((......-.)-----------------------))---))...)).)))))..))).)))).)))....))))))) ( -23.60) >DroYak_CAF1 34177 115 - 1 UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUUAGAAAA-AAGGGGAUCACUUUAGUCAAAGUAUAG---UGAAACAGUUUUGUAAGGAAAGAGACA-AUUAAUGCCA ......(((((((......(((((((((....).))))))))((((.((((-....(..(((((.((.......)).))---)))..)..)))).))))..........-...))))))) ( -29.00) >consensus UUGUUUUGGCAUUUAAAAAUGCGCUUCCUUGUGAGAGGUGCACUUAGAAAA_AAAAGGAUCACAUUAGUCAAAGUAAAG_C_UAAAAAAGCUGUAUAAAGAAAGAGGCAGAUUAAUGCCA ......(((((((......(((((((((....).))))))))...............................................(((.............))).....))))))) (-15.50 = -15.10 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:55 2006