Locus 3636

Sequence ID 3L_DroMel_CAF1
Location 10,687,160 – 10,687,251
Length 91
Max. P 0.758249
window5672

overview

Window 2

Location 10,687,160 – 10,687,251
Length 91
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 87.99
Mean single sequence MFE -23.76
Consensus MFE -15.31
Energy contribution -15.67
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.91
Structure conservation index 0.64
SVM decision value 0.49
SVM RNA-class probability 0.758249
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10687160 91 - 23771897
U--CUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUCGAGACAGUGAAUGAAAGCUA----------------CAUGGUGCACAUGUAUUUCAUUUUUUA
.--(((((((..(((((...(((........)))....)))))...))))))).((((((((..((----------------((((.....)))))))))))))).... ( -25.00)
>DroSec_CAF1 21403 92 - 1
UCGCUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUCGAGACAGUGAAUGAAAGCUA----------------CAUG-UGCACAUGUAUUUCAUUUUUAA
((((((((((..(((((...(((........)))....)))))...))))))))))((((((..((----------------((((-....))))))))))))...... ( -28.30)
>DroSim_CAF1 22872 92 - 1
UCUCUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUCGAGACAGUGAAUGAAAGCUA----------------CAUG-UGCACAUGUAUUUCAUUUUUAA
((.(((((((..(((((...(((........)))....)))))...))))))).))((((((..((----------------((((-....))))))))))))...... ( -24.70)
>DroEre_CAF1 22146 93 - 1
U--CUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUGGAGGCACUGAAUGAAAGCUAC-------------UACAUG-UGCACAUGUAUUUCAUUUUUAA
.--.((((((..(((((...(((........)))....)))))...))))))..((((((((.....-------------((((((-....)))))))))))))).... ( -21.10)
>DroYak_CAF1 33626 106 - 1
G--CUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUCGAGGCUCUGAAUGAAAGUUACAUACAUAUAUACAUACAUG-UGCACAUGUAUUUCAUUUUUAA
.--..(((((..(((((...(((........)))....)))))...)))))...((((((((((.....)).........((((((-....)))))))))))))).... ( -19.70)
>consensus
U__CUGUCUCAUUUCGAAUUUAUUAAAUUAUAUGCAAGUCGAGUUCGAGACAGUGAAUGAAAGCUA________________CAUG_UGCACAUGUAUUUCAUUUUUAA
...(((((((..(((((...(((........)))....)))))...))))))).((((((((....................((((.....))))..)))))))).... (-15.31 = -15.67 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:53 2006