| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,686,363 – 10,686,465 |
| Length | 102 |
| Max. P | 0.620769 |
| Location | 10,686,363 – 10,686,465 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 93.63 |
| Mean single sequence MFE | -16.85 |
| Consensus MFE | -13.16 |
| Energy contribution | -14.47 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10686363 102 - 23771897 AUUCCAAGUCAUUCAUCUGAUUAUAACCCCGCGUUGAUCAGCUGCCCAUUGCACCUGAACAAUUUGUUUUGUACAUAAACAAUAUUAAAUGAAUAAAAAUAU ..........((((((.((((...........((((.((((.(((.....))).)))).))))((((((.......)))))).)))).))))))........ ( -16.60) >DroSec_CAF1 20629 101 - 1 AUUCCAAGUCAUUCAUCUGAUUAUAACCCCGCGUUGAUCAGCUGCCCAUUGCACCUGAACAAUUUGUUUUGUACAUAAACAAUAU-AAAUGAAUAAAAAUAU ..........((((((....(((((.......((((.((((.(((.....))).)))).))))((((((.......)))))))))-))))))))........ ( -15.70) >DroSim_CAF1 22098 102 - 1 AUUCCAAGUCAUUCAUCUGAUUAUAACCCCGCGUUGAUCAGCUGCCCAUUGCACCUGAACAAUUUGUUUUGUACAUAAACAAUAUUAAAUGAAUAAAAAUAU ..........((((((.((((...........((((.((((.(((.....))).)))).))))((((((.......)))))).)))).))))))........ ( -16.60) >DroEre_CAF1 21362 96 - 1 AUUUCAAGUCGUUCAGCUGAUUAUACCACG------AUCAGCUGCCCAUUGCACCUGAACAAUUUGUUUUGUACAUAAACAAUAUUAAAUGAAUAAAAAUAU ....(((((.((((((((((((.......)------))))))(((.....)))..))))).)))))((((((.(((............))).)))))).... ( -18.50) >consensus AUUCCAAGUCAUUCAUCUGAUUAUAACCCCGCGUUGAUCAGCUGCCCAUUGCACCUGAACAAUUUGUUUUGUACAUAAACAAUAUUAAAUGAAUAAAAAUAU ..........((((((.((((...........((((.((((.(((.....))).)))).))))((((((.......)))))).)))).))))))........ (-13.16 = -14.47 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:52 2006