Locus 3634

Sequence ID 3L_DroMel_CAF1
Location 10,684,872 – 10,684,989
Length 117
Max. P 0.999812
window5670

overview

Window 0

Location 10,684,872 – 10,684,989
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.29
Mean single sequence MFE -37.05
Consensus MFE -36.11
Energy contribution -36.35
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.44
Structure conservation index 0.97
SVM decision value 4.14
SVM RNA-class probability 0.999812
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10684872 117 + 23771897
GUUGGAUGUUUGGCCG--UGGCUGCGGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAA-ACCAAGCGACCGAC
(((((.(((((((...--.((((....))))(((((......(((((((...................)))))))...((((....)))))))))..........-.))))))).))))) ( -37.91)
>DroSec_CAF1 19204 117 + 1
GUUGGAUGUUUGGCCG--UGGCUGCGGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAA-ACCAAGCGACCGAC
(((((.(((((((...--.((((....))))(((((......(((((((...................)))))))...((((....)))))))))..........-.))))))).))))) ( -37.91)
>DroSim_CAF1 20404 117 + 1
GUUGGAUGUUUGGCCG--UGGCUGCGGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAA-ACCAAGCGACCGAC
(((((.(((((((...--.((((....))))(((((......(((((((...................)))))))...((((....)))))))))..........-.))))))).))))) ( -37.91)
>DroEre_CAF1 19914 117 + 1
CUUGGAUGUUUGGCCG--UGGUUGCAGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAA-ACCAAGCGACCGAC
.((((.(((((((...--.((((....))))(((((......(((((((...................)))))))...((((....)))))))))..........-.))))))).)))). ( -33.41)
>DroYak_CAF1 31368 120 + 1
CUUGGAUGUUUGGCUGUGUGGCUGCAGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAAAACCAAGCGACCGAC
.((((.(((((((...(((((((....))))(((((......(((((((...................)))))))...((((....)))))))))......)))...))))))).)))). ( -38.11)
>consensus
GUUGGAUGUUUGGCCG__UGGCUGCGGAGCCGCUGCUCAAACUCGUUUCAAUUAAAAUUCUUGGCCAAGAAGCGACAACAACAGAAGUUGGCAGCAAACAAACAA_ACCAAGCGACCGAC
(((((.(((((((......((((....))))(((((......(((((((...................)))))))...((((....)))))))))............))))))).))))) (-36.11 = -36.35 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006