Locus 3631

Sequence ID 3L_DroMel_CAF1
Location 10,681,976 – 10,682,070
Length 94
Max. P 0.933687
window5663

overview

Window 3

Location 10,681,976 – 10,682,070
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -27.52
Consensus MFE -24.21
Energy contribution -24.02
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -2.22
Structure conservation index 0.88
SVM decision value 1.23
SVM RNA-class probability 0.933687
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10681976 94 - 23771897
--------------------------UCUACCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGUAGAGGGUGGUCUUUUGGGUAU
--------------------------...(((((((.........(....).......((((((((...(((((........)))))......)))))))).)))))))........... ( -24.40)
>DroSec_CAF1 16323 94 - 1
--------------------------UCUACCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGCAGAGGGUGGUCUUCUGGGUAU
--------------------------......(((((.........((((((.((...((((((((...(((((........)))))......))))))))...)).))))))))))).. ( -26.80)
>DroSim_CAF1 17550 94 - 1
--------------------------UCUACCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGCAGAGGGUGGUCUUCUGGGUAU
--------------------------......(((((.........((((((.((...((((((((...(((((........)))))......))))))))...)).))))))))))).. ( -26.80)
>DroEre_CAF1 16923 120 - 1
GCAGUACUGCCUCCUGCCUCCUGCCUCCUGCCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGUAGAGGGUGGCCUUCUGGGUAU
((((.........))))....(((((...(((((((.........(....).......((((((((...(((((........)))))......)))))))).))))))).....))))). ( -33.90)
>DroYak_CAF1 28338 93 - 1
---------------------------CUGCCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGUAGAGGGUGGCCUUCUGGGUAU
---------------------------.....(((((.........((((((.((...((((((((...(((((........)))))......))))))))...)).))))))))))).. ( -27.50)
>DroAna_CAF1 16675 93 - 1
--------------------------UCUGCCUCUCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCAGUA-AAUGCUAUCUCAAUGUUUGCAGUGAGUAUGGAAUGGGGUAU
--------------------------..((((((...((((....(....)......(((((((((...((((((...-..))))))......)))))))))...))))....)))))). ( -25.70)
>consensus
__________________________UCUACCGCCCACAUAAAAACGAAGGCAAUAAACUGCAAAUUUCAUGGCUGUAAAAUGCUAUCUCAAUGUUUGCAGAGGGUGGUCUUCUGGGUAU
.............................(((((((.........(....).......((((((((...(((((........)))))......)))))))).)))))))........... (-24.21 = -24.02 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:45 2006