Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,681,829 – 10,681,936 |
Length | 107 |
Max. P | 0.950902 |
Location | 10,681,829 – 10,681,936 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.88 |
Mean single sequence MFE | -22.81 |
Consensus MFE | -11.18 |
Energy contribution | -13.55 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.10 |
Mean z-score | -2.39 |
Structure conservation index | 0.49 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.950902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10681829 107 + 23771897 CAUAUAACAUAGGAAAAUC-----------AAUUAGAUACGUCUUAAAAUACAAUAAAAACAAAAAUGGGCUUAAAACGUCCCACGUUGGGCGC--GUAACCUCAUUAGUUGUAUAACAU .(((((((.(((((..(((-----------.....)))...)))))..................((((((.(((...(((((......))))).--.))).)))))).)))))))..... ( -22.00) >DroSec_CAF1 16163 120 + 1 UAUAUAACACAGAAAAAUAAUGCUUUUUAAAAUCAUACACGUCUUAAAAUACAAUAAAUACAAAAAUGGGGUUACACAGUCCCACGUUGGGCGGCACUAAACUCAUUAGUUGUAUAACAU ((((((((............((..((((((.((.......)).))))))..))...........((((((........((((......)))).........)))))).)))))))).... ( -17.03) >DroSim_CAF1 17390 120 + 1 AAAAUAACACAGAAAAACAAUGCUUUUUAAAAUCAUACACGUCUUAAAAUUCAAUAAAUACAAAAAUGGGGUUACAACGUACCACGUUGGGCGCCACUAACCUCAUUAGUUGUAUAACAU ....................((..((((((.((.......)).))))))..))....((((((.(((((((((((((((.....)))))(....)..))))))))))..))))))..... ( -21.30) >DroEre_CAF1 16774 109 + 1 CACAUAA----------CAAGACUUUUUG-AACCGGAGAAGUCUUAAAAUACAUUUAAUACAAAGCUGGUGCUAAAACGCCCCACGUUGGGCGCCAGUUACUGCACUCGUUAUAUAACGC ...((((----------(((((((((((.-.....))))))))))..................((((((((((..((((.....)))).)))))))))).........)))))....... ( -30.90) >consensus CAUAUAACACAGAAAAACAAUGCUUUUUA_AAUCAGACACGUCUUAAAAUACAAUAAAUACAAAAAUGGGGUUAAAACGUCCCACGUUGGGCGCCACUAACCUCAUUAGUUGUAUAACAU .........................................................((((((.((((((((((...(((((......)))))....))))))))))..))))))..... (-11.18 = -13.55 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:44 2006