| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,048,519 – 1,048,625 |
| Length | 106 |
| Max. P | 0.706462 |
| Location | 1,048,519 – 1,048,625 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 88.10 |
| Mean single sequence MFE | -17.66 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.19 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1048519 106 + 23771897 --------GAAGAAGAAGAAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACAC--AAAAGU --------...............((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))...............--...... ( -17.19) >DroSec_CAF1 23117 116 + 1 GAGAAGAAGAAGAAGAAGCAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACACACAAAAGU .......................((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))....................... ( -17.19) >DroSim_CAF1 23886 116 + 1 GAGAAGAAGAAGAAGAAGCAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACACAGAAAAGU .......................((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))....................... ( -17.19) >DroEre_CAF1 26152 97 + 1 -----------------GAAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACAC--AAAUGU -----------------......((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))...............--...... ( -17.19) >DroYak_CAF1 24088 100 + 1 --------------GAAGAAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACAC--AAAUGU --------------.........((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))...............--...... ( -17.19) >DroAna_CAF1 22275 105 + 1 --------CAAGAAGCAGAGGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACAUACUC---CGU --------......(((((.(((((.(.((....)).)))))).(((((((((.(((....))).))))).))))..........)))))....................---... ( -20.00) >consensus ________GAAGAAGAAGAAGCAAGUGCAGGAAACUACUUUGCAUUUAAUUGUCUGUAAUGACGUGCAAUAUAAAAUGUUAAAAAUCUGCACUAAAAUCCAAACACAC__AAAAGU .......................((((((((..........((((((.(((((.(((....))).)))))...))))))......))))))))....................... (-17.19 = -17.19 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:07 2006