Locus 3627

Sequence ID 3L_DroMel_CAF1
Location 10,676,293 – 10,676,400
Length 107
Max. P 0.931967
window5655

overview

Window 5

Location 10,676,293 – 10,676,400
Length 107
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 96.77
Mean single sequence MFE -31.23
Consensus MFE -30.17
Energy contribution -30.12
Covariance contribution -0.06
Combinations/Pair 1.07
Mean z-score -1.10
Structure conservation index 0.97
SVM decision value 1.22
SVM RNA-class probability 0.931967
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10676293 107 + 23771897
CAA-AAACGGACAUGGAGGCCGAGCCAUCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
...-........((((((((((....(((((((((.((......)).))))))..)))....)))))..(((((....)))))......))))).............. ( -29.00)
>DroSec_CAF1 10719 107 + 1
CAA-AAACGGACAUGGAGGCCGAGCCAUCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
...-........((((((((((....(((((((((.((......)).))))))..)))....)))))..(((((....)))))......))))).............. ( -29.00)
>DroSim_CAF1 11132 107 + 1
CAA-AAACGGACAUGGAGGCCGAGCCUUCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
...-.....((((.((((((...)))))).))))........((.((((.(((......))))))).))(((((....))))).....((((.....))))....... ( -29.50)
>DroEre_CAF1 11259 107 + 1
CAA-GAACGGACAUGGAGGCCGAGCCUCCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
(((-((.((.((..((((((...)))))).(((((.((......)).))))))))).)))))..((...(((((....))))).....((((.....))))..))... ( -32.80)
>DroYak_CAF1 22570 108 + 1
CAAAAAACGGACAUGGAGGCCGAGCCUCCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
.........((((.((((((...)))))).))))........((.((((.(((......))))))).))(((((....))))).....((((.....))))....... ( -32.40)
>DroAna_CAF1 11046 107 + 1
AGA-AAACGGACACGGAGGCCUGGCCUCCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
...-...(((.(((((((((...))))))((((((.((......)).))))))........))).))).(((((....))))).....((((.....))))....... ( -34.70)
>consensus
CAA_AAACGGACAUGGAGGCCGAGCCUCCUUGUUGACACACUUCUGCCAACAGUUGAUCUUGUGGCCGACCGCAGGCAUGCGGAUUAAAUCCAUAAAGGAUACGCACA
.......(((.(((((((((...))))))((((((.((......)).))))))........))).))).(((((....))))).....((((.....))))....... (-30.17 = -30.12 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:37 2006