| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,672,421 – 10,672,540 |
| Length | 119 |
| Max. P | 0.967616 |
| Location | 10,672,421 – 10,672,540 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.95 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -16.56 |
| Energy contribution | -17.68 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10672421 119 + 23771897 CAAACCAUA-AAAUACAUUGUUGAACACCAAUUGAUUUUACCGCCAAAGUUGAGUGGUGAAAUCAAUAAGUUCAAACGAGCAAUGUUAAAAGUGAACAUAAAUGCAGCUUAUAAAUGAAA .....(((.-....((((((((((((....((((((((((((((((....)).))))))))))))))..))))).....))))))).....))).......................... ( -28.90) >DroSec_CAF1 7107 119 + 1 CAAACCAUC-AAAUACAUUGUUGAACACCAAUUGAUUUUCCCGCGAAAGUUAAGUGGUGAAAUCAAUAAGUUCAAACAAACAAUGUAAAAAGUGAAGUGAAAUGCGGCUUAUAAAUGAAA .......((-(..(((((((((((((....((((((((..((((.........))))..))))))))..))))).....))))))))..((((...((.....)).)))).....))).. ( -27.10) >DroSim_CAF1 7004 119 + 1 CAAACCAUA-AAAUACAUUGUUGAACACCAAUUGAUUUUCCCGCGAAAGUUGUGUGGUGAAAACAAUAAGUUCAAACAAGCAAUGUAAAAAGUGAAGUGAAAUGCGGUUUAUAAAUGAAA .(((((...-...(((((((((((((....((((.((((((((((.......))))).)))))))))..))))).....)))))))).........((.....))))))).......... ( -26.50) >DroEre_CAF1 7553 117 + 1 CAAACCAAACGAAUACAAUGUUGAAUACCGAUUGUUUUCCGCGCGCAAGGUGUGUGGUGAAAUCAAUAAGUUCAAAUGAACUAUGUGGAGGGUUCAUUUAAAAGCGGAUUAUAAAUA--- ....((................((((....((((((((((((((((...)))))))).)))).))))..))))(((((((((........)))))))))......))..........--- ( -26.10) >DroYak_CAF1 18408 119 + 1 CCAACCAUACGAAUAC-GUGUUGAAUACAAAUUGAUUUUCCCGCCAAAGAUGAGUGGUGAAAUUAAUAGGUUCAAAUGAACUAUGUUGAGAGUUAACUAAAAAGCGGAUUAUAAAUGAAA ....((..(((....)-))(((((...(((((((((((..((((((....)).))))..)))))))).(((((....)))))...)))....)))))........))............. ( -22.40) >consensus CAAACCAUA_AAAUACAUUGUUGAACACCAAUUGAUUUUCCCGCGAAAGUUGAGUGGUGAAAUCAAUAAGUUCAAACGAACAAUGUAAAAAGUGAACUGAAAUGCGGAUUAUAAAUGAAA .............(((((((((((((....(((((((((.((((.........)))).)))))))))..))))).....))))))))................................. (-16.56 = -17.68 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:34 2006