Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,663,465 – 10,663,557 |
Length | 92 |
Max. P | 0.993998 |
Location | 10,663,465 – 10,663,557 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 72.23 |
Mean single sequence MFE | -12.20 |
Consensus MFE | -11.36 |
Energy contribution | -11.17 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -1.30 |
Structure conservation index | 0.93 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10663465 92 + 23771897 AAUCCUAGCCAGUAAGAAGA-UUGCCCCGUUUUUCUAGGGGCGCACACCACACACACACAAACACACACAAACCAUUCAACCAACAAAUCC-CC ....................-..(((((.........))))).................................................-.. ( -10.80) >DroPse_CAF1 14977 75 + 1 AAUGCUAGCC-GUAAGACGAACUGCCCCGUU-UUCUAGGGGCAC-------AC-C------ACAUCCAUCCCCUAUUCACGCCCGAC--ACCC- ...((..(.(-....).)....((((((...-.....)))))).-------..-.------...................)).....--....- ( -13.30) >DroSec_CAF1 8097 77 + 1 AAUCCUAGCCAGUAAGAAGA-UUGCCCCGUUUUUCUAGGGGCAC-------ACACA------CACACACAAACCAUUCAAUCACCAC--CC-CC ....................-.((((((.........)))))).-------.....------.........................--..-.. ( -11.40) >DroPer_CAF1 16140 75 + 1 AAUGCUAGCC-GUAAGACGAACUGCCCCGUU-UUCUAGGGGCAC-------AC-C------ACAUCCAUCCCCUAUUCACGCCCGAC--ACCC- ...((..(.(-....).)....((((((...-.....)))))).-------..-.------...................)).....--....- ( -13.30) >consensus AAUCCUAGCC_GUAAGAAGA_CUGCCCCGUU_UUCUAGGGGCAC_______AC_C______ACACACACAAACCAUUCAAGCACCAC__AC_C_ ......................((((((.........))))))................................................... (-11.36 = -11.17 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:31 2006