| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,662,475 – 10,662,570 |
| Length | 95 |
| Max. P | 0.818333 |
| Location | 10,662,475 – 10,662,570 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 70.57 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -24.80 |
| Energy contribution | -24.72 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10662475 95 - 23771897 UGCCCAAAGG-------CA------------GGACCAAAACCCACCUCUAAAGAGCUGCUGCUGGAACGCCUGCAUGGCUGCCGCCGUAGCAGCUGGCGAGGAACCGCUCAGUC ((((....))-------))------------((........)).((((.....((((((((((((...(((.....)))..)))..)))))))))...))))............ ( -33.00) >DroSim_CAF1 6560 103 - 1 UACCCAAAGC-------UAAAUGAAAAAUAU----AUUAACCCACCUAUAAAGAGCUGCUGCUGGAACGCCUGCAUGGCUGCCGCCGUGGCAGCUGGCGAGGAACCGCUCAGUC ........((-------(.............----..................((((((..((((...(((.....)))..)))..)..))))))((((......)))).))). ( -25.60) >DroEre_CAF1 6760 99 - 1 CACUUCAAAUUGACAUCU-AG--------------CAAAACGCACCUCUAAAGAGCUGCUGCUGGAACGCCUGCAUGGCGGCCGCCGUGGCAGCUGGCGAGGAACCGCUCAGCC ...............(((-((--------------((....(((.(((....))).)))))))))).((((.....))))(((.....))).(((((((......))).)))). ( -35.80) >DroYak_CAF1 6636 100 - 1 UACUUUAAAUUGACAUCCAAG--------------UGAAACCCACCUCUAAAGAGCUGUUGCUGGAACGCCUGCAUGGCGGCCGCCGUGGCAGCUGGCGAGGAACCGCUCAGUC ..(((((..(((.....)))(--------------((.....)))...)))))((((((..(.((..((((.....))))....)))..))))))((((......))))..... ( -30.40) >DroAna_CAF1 14986 102 - 1 UUA-CAAAACAGU--------UCAGAAAU---CAAUAAAAGUCACCUCUAAAGAGCUGCUGCUGGAAGGCCUGCAUGGCCGCCGCUGUGGCAGCUGGCGAGGAGUUGCCCAAUG ...-.........--------........---............((((.....((((((..((((..((((.....)))).)))..)..))))))...))))............ ( -29.00) >DroPer_CAF1 15205 94 - 1 GGC---AAGUGG----CUAAG--A-----------AGAAUCCUACCUCUGAAGAGCUGCUGUUGGAAAGCCUGCAUGGCUGCCGCUGUGGCCGCAGGCGAGGUGUUGUUCAUUG (((---.....)----))...--.-----------.((((..((((((.....(((....))).....((((((..(((..(....)..)))))))))))))))..)))).... ( -33.60) >consensus UAC_CAAAAU_G_____UAAG______________AAAAACCCACCUCUAAAGAGCUGCUGCUGGAACGCCUGCAUGGCUGCCGCCGUGGCAGCUGGCGAGGAACCGCUCAGUC ............................................((((.....(((((((((.((..((((.....))))....)))))))))))...))))............ (-24.80 = -24.72 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:30 2006