Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,649,727 – 10,649,825 |
Length | 98 |
Max. P | 0.985100 |
Location | 10,649,727 – 10,649,825 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -14.29 |
Consensus MFE | -8.34 |
Energy contribution | -8.88 |
Covariance contribution | 0.54 |
Combinations/Pair | 1.06 |
Mean z-score | -2.58 |
Structure conservation index | 0.58 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10649727 98 + 23771897 AUCAUUUCACUCAAGA-AAAAAAUUAUAAAACAAAAAAACG----AGAAAAAAACAAAAGGCAGGCGGCUAAAA-----AAAGUGGCAAAGCUACUUUUUGUUGUUAU ....((((......))-))......................----.......(((((((((..(((.((((...-----....))))...))).)))))))))..... ( -15.00) >DroGri_CAF1 11145 77 + 1 ---AUUUCACGCAAA-ACA-AAAGCAGCAAAGAGCAAAAUG----AAAAA----------------G--AAAAA----AAAAGUGGCAAAGCUACUUUUUGUUGUUUU ---............-...-((((((((...........(.----...).----------------.--....(----(((((((((...)))))))))))))))))) ( -14.10) >DroSec_CAF1 12100 98 + 1 AUCAUUUCACUCAAGA-AUAAAAUUAUAAAACAAAAAAACG----AGAAA-AAACAAAAGGCAGACGGCUAAAA----AAAAGUGGCAAAGCUACUUUUUGUUGUUAU .........(((....-.......................)----))...-.(((((..(((.....)))...(----(((((((((...)))))))))).))))).. ( -13.53) >DroSim_CAF1 11462 102 + 1 AUCAUUUCACUCAAGA-AAAAAAUUAUAAAACAAAAAAACG----AGAAA-AAACAAAAGGCAGACGGCUAAAAAAAAAAAAGUGGCAAAGCUACUUUUUGUUGUUAU ....((((......))-))......................----.....-.(((((..(((.....))).......((((((((((...)))))))))).))))).. ( -14.40) >DroEre_CAF1 12537 99 + 1 AUCAUUUCACUCAAGA-AAAAAAUUAUAAAACAAAAA----AAAUACAAA-AAACAAAAGGCAGACGGCUAAAAA---AAAAGUGGCAAAGCUACUUUUUGUUGUUAU ....((((......))-))..................----.........-.(((((..(((.....)))....(---(((((((((...)))))))))).))))).. ( -14.40) >consensus AUCAUUUCACUCAAGA_AAAAAAUUAUAAAACAAAAAAACG____AGAAA_AAACAAAAGGCAGACGGCUAAAA____AAAAGUGGCAAAGCUACUUUUUGUUGUUAU .............................(((((.........................(((.....)))........(((((((((...)))))))))..))))).. ( -8.34 = -8.88 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:19 2006