Locus 3614

Sequence ID 3L_DroMel_CAF1
Location 10,648,926 – 10,649,031
Length 105
Max. P 0.971996
window5633

overview

Window 3

Location 10,648,926 – 10,649,031
Length 105
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 82.65
Mean single sequence MFE -24.46
Consensus MFE -22.00
Energy contribution -21.88
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -2.16
Structure conservation index 0.90
SVM decision value 1.68
SVM RNA-class probability 0.971996
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10648926 105 + 23771897
CAUUGUCCUCGACCUGCAGUUU---UUUCGCUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUGCGCCCCUCUCUAUCCCUCUCUGUCUCUCCCUUUCGCACAAUGUCCG
((((((...(((...(((((..---....))))).........(((((((........))))).))............................))).)))))).... ( -23.00)
>DroSec_CAF1 11318 92 + 1
CAUUGU---CGACCUGCAGUUU---UUUCGCUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUCUGCCCCC----------CUCUCUCGCUCUCUCUCGCACAGUGCUCG
((((((---(((...(((((..---....))))).........(((((((.....))))))).......----------...............))).)))))).... ( -25.60)
>DroSim_CAF1 10667 97 + 1
CAUUGU---CGACCUGCAGUUU---UUUCGCUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUCUGCCCCC-----UCUCUCUCUAUCUCUCUCUCUCGCACAGUGCUCG
((((((---(((...(((((..---....))))).........(((((((.....))))))).......-----....................))).)))))).... ( -25.60)
>DroEre_CAF1 11746 86 + 1
CAUUGU---CGACCUGCAGUUUUUUUUUCGUUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUCUGCCC-------------------CCUCUCUCUCGCACAGUGGCCG
((((((---(((...((((...........)))).........(((((((.....))))))).....-------------------........))).)))))).... ( -21.60)
>DroYak_CAF1 11620 90 + 1
CAUUGU---CGACCUGCAGUUU---UUUCGCUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUCUGCCCCC----------CU--CUCCCUCUCUCUCGCACAGUGGCAG
((((((---(((...(((((..---....))))).........(((((((.....))))))).......----------..--...........))).)))))).... ( -26.50)
>consensus
CAUUGU___CGACCUGCAGUUU___UUUCGCUGCUAUUUAAAUGGGCAGCUGUCAGCUGCUCUGCCCCC__________CUCUCUCCCUCUCUCUCGCACAGUGCCCG
((((((...(((...(((((.........))))).........(((((((.....)))))))................................))).)))))).... (-22.00 = -21.88 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:16 2006