Locus 3613

Sequence ID 3L_DroMel_CAF1
Location 10,648,534 – 10,648,632
Length 98
Max. P 0.868693
window5632

overview

Window 2

Location 10,648,534 – 10,648,632
Length 98
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -23.27
Consensus MFE -17.59
Energy contribution -19.03
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -3.51
Structure conservation index 0.76
SVM decision value 0.86
SVM RNA-class probability 0.868693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10648534 98 - 23771897
UCCAGAGACAAGUGAAUAGAUACUUUCCCAUAAGAUAUAAGAGAUAU-UCGGGAUAAGUAU----CUAAGCUAUGCCAAAGCAACAACAACAAUCACAACUUU
...........((((.(((((((((((((....(((((.....))))-).)))).))))))----))).(((.......)))...........))))...... ( -22.50)
>DroSec_CAF1 10910 102 - 1
UCCAGAGACAAGUGAAUAGAUACUUUCCCAUAAGAUAUGAGAUAUAU-UCGGGAUAAGUAUCUAUCUAAGCUACACCAAAGCAACAGCAACAAUCACAACAUG
...........((((((((((((((((((....((((((...)))))-).)))).))))))))))....(((.......)))...........))))...... ( -22.70)
>DroSim_CAF1 10266 103 - 1
UCCAGAGACAAGUGAAUAGAUACUUUCCCAUAAGAUAUGAGAUAAGUAUCGGGAUAAGUAUCUAUCUAAGCUACACCAAAGCAACAGCAACAAUCACAACAUG
...........((((((((((((((((((....(((((.......))))))))).))))))))))....(((.......)))...........))))...... ( -24.60)
>consensus
UCCAGAGACAAGUGAAUAGAUACUUUCCCAUAAGAUAUGAGAUAUAU_UCGGGAUAAGUAUCUAUCUAAGCUACACCAAAGCAACAGCAACAAUCACAACAUG
...........((((((((((((((((((.....((((.....))))...)))).))))))))))....(((.......)))...........))))...... (-17.59 = -19.03 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:15 2006