| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,045,599 – 1,045,705 |
| Length | 106 |
| Max. P | 0.907098 |
| Location | 1,045,599 – 1,045,705 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -29.15 |
| Consensus MFE | -21.35 |
| Energy contribution | -22.68 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1045599 106 - 23771897 GGGAAAUGUGGCAGAAGACGGGACUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGGAGAGCAGCUCCUUGGCAAAAAAAAAAAAAGAA ((((((((((.(((.........))))))))))(((((.((((...(((..(((.........)))..))).)))).))))))))..................... ( -28.50) >DroSec_CAF1 20263 100 - 1 GGGAAAUGUGGCAGAAGACGGGGCUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGGAGAGCAGCUCCUUGGCAAAAAGAAA------A ..........((....((.((((((((...(((((((..(.(((....))).)..))))))).((....))......)))))))))).)).........------. ( -29.40) >DroSim_CAF1 21015 100 - 1 GGGAAAUGUGGCAGAAGACGGGGCUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGGAGAGCAGCUCCUUGGCAAAAAGAAA------A ..........((....((.((((((((...(((((((..(.(((....))).)..))))))).((....))......)))))))))).)).........------. ( -29.40) >DroEre_CAF1 23345 80 - 1 ---------------AGACGGGGCUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGUUGAGCAGCUCCUUGGCAAAA-----------A ---------------....((((((((....((((((..(.(((....))).)..))))))((((......))))..)))))))).........-----------. ( -28.70) >DroYak_CAF1 21182 89 - 1 -----AAGCGGCAGAAGACGGGGCUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGGAGAGCAGCUCCUUGGCAAA------------A -----.....((....((.((((((((...(((((((..(.(((....))).)..))))))).((....))......)))))))))).))...------------. ( -29.40) >DroAna_CAF1 19018 82 - 1 AGGAUAUUAUGGAGAA----GGGGUGCACAUUCGCUGCACUCUCGACUGGGCGGCCAGGAAAGCUGGCCAGA--------ACUCCUUGAGAAAA------------ ......(((.((((..----((((((((.......))))))))...((((.((((.......)))).)))).--------.)))).))).....------------ ( -29.50) >consensus GGGAAAUGUGGCAGAAGACGGGGCUGCACAUUUGCUGCACUCUCGACUGGGCGGACAGCAAAACUGGACAGAGGAGAGCAGCUCCUUGGCAAAA___________A ...................((((((((...(((((((..(.(((....))).)..))))))).((....))......))))))))..................... (-21.35 = -22.68 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:04 2006