Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,629,201 – 10,629,318 |
Length | 117 |
Max. P | 0.598216 |
Location | 10,629,201 – 10,629,318 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 88.26 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -18.46 |
Energy contribution | -18.14 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10629201 117 + 23771897 AAAUUUGUUGAAGCUAAUAGAUUGAUUAAACUGCUGACCUUAAAAAGGCGGUUUAUGUAUUUGUUUACACUUCGAUUUGUUUAUGUCGGCGGUUUUUUCUAUUUUCGUCGAAAUUAA ((((..(((((((..(((((((....(((((((((...........)))))))))...)))))))....)))))))..))))...(((((((............)))))))...... ( -28.50) >DroSec_CAF1 511431 117 + 1 AAAUUUGUUGAAACUAAUAGAUUGAUUAAACUGCUGACCUUAAAAAGGCAGUUUACGUGUUUGUUUGCACUUCGAUUUGUUUAUGUCGGCGGUUUUUUCUAUUUUUGUUGAAAUUGA ......(((((....((((((((((.(((((((((...........))))))))).((((......)))).))))))))))....)))))((((((..(.......)..)))))).. ( -28.10) >DroSim_CAF1 513299 117 + 1 AAAUUUGUUCAAAUUAAUAGAUUGAUUAAACUGCUGACCUUAAAAAGGCGGUUUACGUGUUUGUUUACACUUCGAUUUGUUUAUGUCGGCGGUUUUUUCUAUUUUCGUCGAAAUUGA ........((((...((((((((((.(((((((((...........))))))))).((((......)))).))))))))))....(((((((............)))))))..)))) ( -27.70) >DroEre_CAF1 519669 114 + 1 AAAUGGAUUGAAAAUAAUAGAUUGAUUAAAUUGCUGACCUUAAA--AGCGGUUUACGUGUUUGUUUACACUUUGAUUUGUUUAUGCUGUCGGUU-UUUCUAUUUUAGUCGAAACUGA (((..(((..((..............(((((((((.........--))))))))).((((......))))))..)))..)))......((((((-((.(((...)))..)))))))) ( -22.60) >DroYak_CAF1 521962 114 + 1 GAAUUUGUUGAGUAUAAUAGAUUGAUUAAACUGCUGACCUUAAA--GGCGGUUUACGUGUUUGUUUACACUUUGAUUUGUUUAUGCAUUCGGUU-UUUCUAUUUUGGCCGAAACUGA ...........(((((((((((..(.(((((((((.........--))))))))).((((......)))).)..))))).)))))).(((((((-..........)))))))..... ( -28.10) >consensus AAAUUUGUUGAAAAUAAUAGAUUGAUUAAACUGCUGACCUUAAAAAGGCGGUUUACGUGUUUGUUUACACUUCGAUUUGUUUAUGUCGGCGGUUUUUUCUAUUUUCGUCGAAAUUGA ...............((((((((((.(((((((((...........))))))))).((((......)))).))))))))))........(((((((..(.......)..))))))). (-18.46 = -18.14 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:08 2006