| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,610,332 – 10,610,427 |
| Length | 95 |
| Max. P | 0.627705 |
| Location | 10,610,332 – 10,610,427 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -22.18 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10610332 95 - 23771897 AAACGAAA---UUCC-AAAA----U---GUAUUGAA-----UUAAUUGCAA------UUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUGU--U-UCGAUAACCACACGC ........---....-....----.---.(((((((-----.(((((((((------(...(((((((........))))).))...))))))))))....--)-))))))......... ( -21.40) >DroVir_CAF1 538033 102 - 1 AAC-AACC---UCUU-AAAA----UUUUGUAAA-AAAAAAAAUAACUGCAA------UUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUGU--UUUCGAUAACCACACGC ...-....---....-....----..((((..(-(((...(((((((((((------(...(((((((........))))).))...)))))))))))).)--)))..))))........ ( -23.40) >DroPse_CAF1 550542 100 - 1 AAAUACAU---UUUU-GUAA----AAUUGUACUGAA---AACAAAUUGCAA------UUUAGGUCACCAUGUCCAGGGUGAGUCGUUGUUGUAGUUGUUGU--U-UCGAUAACCACACGC ...((((.---...)-))).----........((((---(...((((((((------(...(((((((........))))).))...)))))))))....)--)-)))............ ( -20.60) >DroGri_CAF1 495178 105 - 1 AAAAAAAA---CCUUAAAAA----ACUUGUAUACAAAAAAUAUAACUGCAA------UUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUGU--UUUCGAUAACCACACGC ........---.........----............(((((((((((((((------(...(((((((........))))).))...)))))))))).)))--))).............. ( -20.70) >DroWil_CAF1 783853 115 - 1 AAACCAAACACUUUU-AAAUUUUUUGUUGUAUUGAA---AAACAAUUGCAAUAUAUAUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUGUUUU-UCGAUAACCACACGC ...............-........(((..(((((((---((((((((((((((........(((((((........))))).))..)))))))...))))))))-))))))...)))... ( -24.80) >DroMoj_CAF1 611467 100 - 1 AAAAAAAC---UCUU-AA-A----UUUUGUUAA-A--AUAAAUAACUGCAA------UUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUGU--UCUCGAUAACCACACGC ........---....-..-.----..(((((..-.--...(((((((((((------(...(((((((........))))).))...))))))))))))..--....)))))........ ( -22.20) >consensus AAAAAAAA___UCUU_AAAA____UUUUGUAUAGAA___AAAUAACUGCAA______UUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUGU__U_UCGAUAACCACACGC ...............................................((............(((((((........))))).)).....(((.(((((((......))))))).))).)) (-15.30 = -15.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:04 2006