Locus 3605

Sequence ID 3L_DroMel_CAF1
Location 10,609,203 – 10,609,323
Length 120
Max. P 0.530777
window5619

overview

Window 9

Location 10,609,203 – 10,609,323
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.71
Mean single sequence MFE -39.73
Consensus MFE -24.78
Energy contribution -25.12
Covariance contribution 0.34
Combinations/Pair 1.33
Mean z-score -1.94
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.530777
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10609203 120 - 23771897
GCGACCAUCCCGGACAUCCAUGCGACAUGAACUGCUCCUGCAUUCAGACACAAAACUUCUGCGAAAAGUUCUGCAACUGCAGCAGCGAUUGCCAGAAUCGUUUCCCCGGCUGUCGCUGCA
(((((....((((........((((..((((.(((....)))))))..........((((((((...(((((((....)))).)))..))).)))))))))....))))..))))).... ( -34.70)
>DroGri_CAF1 494033 117 - 1
GCGAUCACGCCGG---UCCCUGCGACGAGAACUGCUCGUGCAUACAGACCCAGAACUUUUGCGAGAAGUUCUGCAACUGCAGCAGCGAUUGCCAGAACCGAUUCCCUGGCUGUCGCUGCA
(((........((---((..(((.(((((.....))))))))....))))(((((((((.....)))))))))....))).((((((((.(((((..........))))).)))))))). ( -49.80)
>DroWil_CAF1 782151 117 - 1
GCGAUCAUGCUGG---CCCGUGUGACAUGAAUUGCUCAUGCAUUUUGACUCACAACUUCUGUGAGAAAUUCUGCAAUUGCAGCAGCGAUUGUCAGAAUCGUUUUCCGGGCUGUCGCUGCA
(((((......((---((((...(((..(((.(((....))).)))..((((((.....))))))..(((((((((((((....))))))).)))))).)))...))))))))))).... ( -43.30)
>DroMoj_CAF1 610345 117 - 1
GCGAUCACGCUGG---GCCUUGUGACAUGAACUGCUCCUGCAUUCAGACGCAGAACUUUUGCGAGAAGUUUUGCAAUUGCAGCAGCGAUUGCCAGAAUCGUUUUCCAGGCUGCCGUUGCA
(((((((((....---....)))))..((((.(((....)))))))...((((((((((.....))))))))))..)))).((((((...(((.(((.....)))..)))...)))))). ( -38.20)
>DroAna_CAF1 481215 117 - 1
GCGACCAUGCAGG---UCCUUGCGACAUGAACUGCUCCUGCAUCCAGACCCAGAACUUCUGCGAGAAAUUCUGUAAUUGCAGCAGUGACUGUCAAAACCGCUUUCCAGGAUGUCGCUGCA
((((..(((((((---.....(((........))).))))))).......(((((.(((.....))).)))))...)))).((((((((.(((...............))))))))))). ( -34.56)
>DroPer_CAF1 559102 117 - 1
GCGACCACGCCGG---UCCCUGCGACGUAAACUGCUCCUGCAUACAGACGCAGAACUUUUGUGAGAAGUUCUGCAACUGUACCACCGAAUGCCAGAACCGUUUCCCUGGAUGCCGCUGCA
((((((.....))---))...(((.(((....(((....)))(((((..((((((((((.....))))))))))..)))))..........((((..........))))))).))).)). ( -37.80)
>consensus
GCGACCACGCCGG___UCCCUGCGACAUGAACUGCUCCUGCAUUCAGACCCAGAACUUCUGCGAGAAGUUCUGCAACUGCAGCAGCGAUUGCCAGAACCGUUUCCCAGGCUGUCGCUGCA
(((....)))..........((((........(((....)))........(((((((((.....)))))))))....))))((((((((.(((.(((....)))...))).)))))))). (-24.78 = -25.12 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:03 2006